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The map label for this gene is ccmF [H]

Identifier: 238920652

GI number: 238920652

Start: 2662361

End: 2664328

Strand: Reverse

Name: ccmF [H]

Synonym: NT01EI_2764

Alternate gene names: 238920652

Gene position: 2664328-2662361 (Counterclockwise)

Preceding gene: 238920653

Following gene: 238920651

Centisome position: 69.89

GC content: 62.7

Gene sequence:

>1968_bases
ATGATCCCAGAGATCGGTAACTTTTTACTGTCGTTGGCGCTGGCGCTTTCCGTGCTGCTCAGCGTCTACCCCTGCTGGGG
CGCGGCGCGCGGCGATCGGCGCATGATGGCACTGGCTCGGCCGCTGGCCTTTGGGTTGTTCGCCACCATAACCCTGTCCT
TTATCTGCCTGGTGTATGCCTTTATCGCCAATGATTTTAGCGTGGCCTACGTAGCAGCCAACTCCAATTCGCAGCTGCCG
GTCTACTTCCGTATTGCCGCGACCTGGGGATCCCATGAGGGGTCACTGCTGCTGTGGGTGATGCTGCTCAGCTGGTGGAC
GCTGGCGGTATCGCTGCTGAGCCGTCGCATGCCGCTGGATTCGGTGGCGCGGGTGCTGTCGGTGATGGGGATGATCAACA
TTGGCTTCCTGCTGTTTATTCTGCTGACCTCCAATCCGTTTATTCGCACGCTGCCCGGCTTTCCTATCGATGGGCGGGAT
CTGAACCCACTGCTGCAGGACGTTGGGCTGATCTTCCACCCGCCGCTGCTGTACATGGGCTATGTCGGTTTTTCCGTCGC
CTTTGCTTTTGCCATCGCCTCGCTGATGGCCGGGCGTCTGGACACCGCCTGGGCTCGCTGGTCGCGTCCCTGGACCATGG
CCGCCTGGGTGTTTCTGACGCTGGGGATCGTCCTGGGATCGTTCTGGGCCTACTATGAGCTGGGCTGGGGCGGCTGGTGG
TTCTGGGATCCGGTGGAAAATGCCTCTCTGATGCCCTGGCTGACCGGCACCGCCCTGCTGCATTCGCTGGCGGTGACCGA
GAAGCGCGGCACCTTTAAGGCCTGGACGGTGCTGCTGGCCATCACCTCCTTCTCGCTGTGCCTGCTGGGTACCTTCCTGG
TGCGCTCCGGGGTGCTGGTCTCCGTCCACGCTTTTGCCTCCGATCCGGCGCGCGGCATGTTCATTTTAGCCTATCTGGTG
GTGGTGATCGGCGGTTCGCTGCTGTTGTATGCGCTGCGCGGCGGTCAGGTGCGCAGTCATACCCGCCATGAGCTGTTCTC
CCGCGAGACGCTGCTGCTGGGGAACAACGTGCTGTTGGTGGCCGCGACGCTGGTGGTGCTGCTGGGGACGCTGCTGCCGC
TGGTGCATAAGCAGCTGGGACTGGGCAGCATCTCCATCGGTGAGCCGTTCTTCAATACCATGTTCACCTATCTGATGGTG
CCGTTCGCCCTGCTGCTGGGCGTTGGCCCCCTGGTGCGTTGGCGTCGAGATTCGCTGGGCCGCCTGCGCACGCCGCTGCT
GGCTGCGCTGGTGCTCAGCGCGGCGCTGGCGCTGCTGCTGCCGTGGTTGCTGCAGGATAGCATTGTGGCCATGACGGTGC
TGGGACTGCTGATGGCTCTGTGGGTGGTGGTGCTGACGCTGGTGGAGCTGTACCAGCGGGCGGCCCATCGCGATGGTTTC
TGGCGCGGATTGGGTAAGCTGTCGCGCAGTCAGTGGGGTATGGTGCTGGCCCATCTCGGGGTGGCGGTGACGGTAATCGG
CATTGCCTTCAGCCAAAACTACAGCATTGAGCGTGACGTGCGAATGAAGTCCGGTGACACCCTGCAGATCCGCGACTACC
GCTTTGTCTTCCGCGATGTGCATGAGATCAGCGGTCCGAACTACAGCGGCGGCGAGGCACTGATCGACGTGCTGCGTAAC
GGTAGGCCGGAGACCACGCTGCGCGCCGAGAAGCGCTTCTATACCAACGCGCGCAGCATGATGACCGAGGCTGCGGTAGA
CGGTGGCCTGACGCGGGATCTGTATGCCGCGCTGGGCGAGGAGCTGGATGATGGCGTCTGGGCCGTCCGGCTGTACTACA
AACCTTTTGTTCGCTGGATCTGGTACGGTGGCGTGCTGATGTCGCTCGGTGGGATGCTGTGCATGCTGGATCCACGTTAC
CGCAGCGCGCGTCGCGCCAAGGATGCTCAGGAGAAGAAAACGGCATGA

Upstream 100 bases:

>100_bases
AAGCGATGAAAGAGAATCATTCGCCGGAGATCGAGGCGGCGGTGAAAGAGAACTCTCATCAGTCCGTATCGGGCGCAGAG
CAACGGGACGGTAACCCATT

Downstream 100 bases:

>100_bases
ACCGTAAACTGCTTTTTATTCCGCTGGCGCTGTTTTTACTGCTGGTGCTGGCGTTTCTGATCCAGCTGCAGCGTAACGCC
AGCGGCGAAGACCCCACGAT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 655; Mature: 655

Protein sequence:

>655_residues
MIPEIGNFLLSLALALSVLLSVYPCWGAARGDRRMMALARPLAFGLFATITLSFICLVYAFIANDFSVAYVAANSNSQLP
VYFRIAATWGSHEGSLLLWVMLLSWWTLAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILLTSNPFIRTLPGFPIDGRD
LNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWW
FWDPVENASLMPWLTGTALLHSLAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLV
VVIGGSLLLYALRGGQVRSHTRHELFSRETLLLGNNVLLVAATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTYLMV
PFALLLGVGPLVRWRRDSLGRLRTPLLAALVLSAALALLLPWLLQDSIVAMTVLGLLMALWVVVLTLVELYQRAAHRDGF
WRGLGKLSRSQWGMVLAHLGVAVTVIGIAFSQNYSIERDVRMKSGDTLQIRDYRFVFRDVHEISGPNYSGGEALIDVLRN
GRPETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGVWAVRLYYKPFVRWIWYGGVLMSLGGMLCMLDPRY
RSARRAKDAQEKKTA

Sequences:

>Translated_655_residues
MIPEIGNFLLSLALALSVLLSVYPCWGAARGDRRMMALARPLAFGLFATITLSFICLVYAFIANDFSVAYVAANSNSQLP
VYFRIAATWGSHEGSLLLWVMLLSWWTLAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILLTSNPFIRTLPGFPIDGRD
LNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWW
FWDPVENASLMPWLTGTALLHSLAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLV
VVIGGSLLLYALRGGQVRSHTRHELFSRETLLLGNNVLLVAATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTYLMV
PFALLLGVGPLVRWRRDSLGRLRTPLLAALVLSAALALLLPWLLQDSIVAMTVLGLLMALWVVVLTLVELYQRAAHRDGF
WRGLGKLSRSQWGMVLAHLGVAVTVIGIAFSQNYSIERDVRMKSGDTLQIRDYRFVFRDVHEISGPNYSGGEALIDVLRN
GRPETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGVWAVRLYYKPFVRWIWYGGVLMSLGGMLCMLDPRY
RSARRAKDAQEKKTA
>Mature_655_residues
MIPEIGNFLLSLALALSVLLSVYPCWGAARGDRRMMALARPLAFGLFATITLSFICLVYAFIANDFSVAYVAANSNSQLP
VYFRIAATWGSHEGSLLLWVMLLSWWTLAVSLLSRRMPLDSVARVLSVMGMINIGFLLFILLTSNPFIRTLPGFPIDGRD
LNPLLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMAGRLDTAWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWW
FWDPVENASLMPWLTGTALLHSLAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAYLV
VVIGGSLLLYALRGGQVRSHTRHELFSRETLLLGNNVLLVAATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTYLMV
PFALLLGVGPLVRWRRDSLGRLRTPLLAALVLSAALALLLPWLLQDSIVAMTVLGLLMALWVVVLTLVELYQRAAHRDGF
WRGLGKLSRSQWGMVLAHLGVAVTVIGIAFSQNYSIERDVRMKSGDTLQIRDYRFVFRDVHEISGPNYSGGEALIDVLRN
GRPETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGEELDDGVWAVRLYYKPFVRWIWYGGVLMSLGGMLCMLDPRY
RSARRAKDAQEKKTA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=655, Percent_Identity=71.4503816793893, Blast_Score=907, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=577, Percent_Identity=38.1282495667244, Blast_Score=297, Evalue=2e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72785; Mature: 72785

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPEIGNFLLSLALALSVLLSVYPCWGAARGDRRMMALARPLAFGLFATITLSFICLVYA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIANDFSVAYVAANSNSQLPVYFRIAATWGSHEGSLLLWVMLLSWWTLAVSLLSRRMPLD
HHHCCCEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
SVARVLSVMGMINIGFLLFILLTSNPFIRTLPGFPIDGRDLNPLLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHCHHHHCCHHHHHH
YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
FWDPVENASLMPWLTGTALLHSLAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLV
EECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAYLVVVIGGSLLLYALRGGQVRSHTRHELFSRETLLLGNNVLLV
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHEECCCHHHH
AATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTYLMVPFALLLGVGPLVRWRRDSLG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RLRTPLLAALVLSAALALLLPWLLQDSIVAMTVLGLLMALWVVVLTLVELYQRAAHRDGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
WRGLGKLSRSQWGMVLAHLGVAVTVIGIAFSQNYSIERDVRMKSGDTLQIRDYRFVFRDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEHHHHHHHHH
HEISGPNYSGGEALIDVLRNGRPETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGE
HHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ELDDGVWAVRLYYKPFVRWIWYGGVLMSLGGMLCMLDPRYRSARRAKDAQEKKTA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPEIGNFLLSLALALSVLLSVYPCWGAARGDRRMMALARPLAFGLFATITLSFICLVYA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIANDFSVAYVAANSNSQLPVYFRIAATWGSHEGSLLLWVMLLSWWTLAVSLLSRRMPLD
HHHCCCEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
SVARVLSVMGMINIGFLLFILLTSNPFIRTLPGFPIDGRDLNPLLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHCHHHHCCHHHHHH
YVGFSVAFAFAIASLMAGRLDTAWARWSRPWTMAAWVFLTLGIVLGSFWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
FWDPVENASLMPWLTGTALLHSLAVTEKRGTFKAWTVLLAITSFSLCLLGTFLVRSGVLV
EECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILAYLVVVIGGSLLLYALRGGQVRSHTRHELFSRETLLLGNNVLLV
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHEECCCHHHH
AATLVVLLGTLLPLVHKQLGLGSISIGEPFFNTMFTYLMVPFALLLGVGPLVRWRRDSLG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
RLRTPLLAALVLSAALALLLPWLLQDSIVAMTVLGLLMALWVVVLTLVELYQRAAHRDGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
WRGLGKLSRSQWGMVLAHLGVAVTVIGIAFSQNYSIERDVRMKSGDTLQIRDYRFVFRDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEHHHHHHHHH
HEISGPNYSGGEALIDVLRNGRPETTLRAEKRFYTNARSMMTEAAVDGGLTRDLYAALGE
HHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ELDDGVWAVRLYYKPFVRWIWYGGVLMSLGGMLCMLDPRYRSARRAKDAQEKKTA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]