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The map label for this gene is ccmH [H]

Identifier: 238920650

GI number: 238920650

Start: 2661310

End: 2661813

Strand: Reverse

Name: ccmH [H]

Synonym: NT01EI_2762

Alternate gene names: 238920650

Gene position: 2661813-2661310 (Counterclockwise)

Preceding gene: 238920651

Following gene: 238920649

Centisome position: 69.82

GC content: 65.48

Gene sequence:

>504_bases
ATGACGGGACTACGCGGAGCCCTGCTGGCGCTGGGATTGCTGTTGCCCGGCGTCCTGTGGGCGGCGGTGATCGATACCTA
TAACTTTACCAGCGAGGCGCAGGAGCAGCAGTACCGCGAGCTGACGGAGCAGCTGCGCTGCCCCAAGTGTCAGAACAACA
GCATTGCCGACTCCAACGCCATCATCGCCTCGGACATGCGCCAGAAGGTGTATGAGCTGATGCAGCAGGGCTATAGCCAG
CAGCAGGTGGTGGATTACATGGTGGCGCGTTACGGCAACTTTGTCACCTATGAGCCACCGGTGACGCCGGCGACCCTGAT
CCTGTGGATCGGGCCGCTGCTGGCGATCCTGGGCGGGGGGTGGGTACTGGTGCGTCTGGCCCGTCGCCGTCCGGCGCGCG
TGGCGCTGCGCGATAGCGAGGTGGCGCAGGCTGACCTCAGCGAGGCCGAGCGGCAGCGCCTGCGGCGCTTGCTTAACCAA
GAGCGTGACGGAGAGCCGCGATGA

Upstream 100 bases:

>100_bases
GCAACGGCATCGTTCGCTATCGTCACGCCGGCGATCTTAATGAACGAATCTGGAAGGAAGAGATTGAACCGCTGTGGCTG
AAATATCAGGGAGGTCAATC

Downstream 100 bases:

>100_bases
TAACCTTTTGGCTGATAGTGCTACTGTTGCTGGCCGTCGCCGCAGCGCTATTGTTGATCCCGGCGCTGCGTACGCCGCGC
GGCAACGACGGGGCGGATCG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MTGLRGALLALGLLLPGVLWAAVIDTYNFTSEAQEQQYRELTEQLRCPKCQNNSIADSNAIIASDMRQKVYELMQQGYSQ
QQVVDYMVARYGNFVTYEPPVTPATLILWIGPLLAILGGGWVLVRLARRRPARVALRDSEVAQADLSEAERQRLRRLLNQ
ERDGEPR

Sequences:

>Translated_167_residues
MTGLRGALLALGLLLPGVLWAAVIDTYNFTSEAQEQQYRELTEQLRCPKCQNNSIADSNAIIASDMRQKVYELMQQGYSQ
QQVVDYMVARYGNFVTYEPPVTPATLILWIGPLLAILGGGWVLVRLARRRPARVALRDSEVAQADLSEAERQRLRRLLNQ
ERDGEPR
>Mature_166_residues
TGLRGALLALGLLLPGVLWAAVIDTYNFTSEAQEQQYRELTEQLRCPKCQNNSIADSNAIIASDMRQKVYELMQQGYSQQ
QVVDYMVARYGNFVTYEPPVTPATLILWIGPLLAILGGGWVLVRLARRRPARVALRDSEVAQADLSEAERQRLRRLLNQE
RDGEPR

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=102, Percent_Identity=69.6078431372549, Blast_Score=165, Evalue=1e-42,
Organism=Escherichia coli, GI1790512, Length=85, Percent_Identity=42.3529411764706, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 18875; Mature: 18744

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLRGALLALGLLLPGVLWAAVIDTYNFTSEAQEQQYRELTEQLRCPKCQNNSIADSNA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
IIASDMRQKVYELMQQGYSQQQVVDYMVARYGNFVTYEPPVTPATLILWIGPLLAILGGG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCH
WVLVRLARRRPARVALRDSEVAQADLSEAERQRLRRLLNQERDGEPR
HHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TGLRGALLALGLLLPGVLWAAVIDTYNFTSEAQEQQYRELTEQLRCPKCQNNSIADSNA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
IIASDMRQKVYELMQQGYSQQQVVDYMVARYGNFVTYEPPVTPATLILWIGPLLAILGGG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHCCH
WVLVRLARRRPARVALRDSEVAQADLSEAERQRLRRLLNQERDGEPR
HHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]