Click here to switch to the map view.

The map label for this gene is ccmH [H]

Identifier: 238920649

GI number: 238920649

Start: 2660099

End: 2661313

Strand: Reverse

Name: ccmH [H]

Synonym: NT01EI_2761

Alternate gene names: 238920649

Gene position: 2661313-2660099 (Counterclockwise)

Preceding gene: 238920650

Following gene: 238920648

Centisome position: 69.81

GC content: 62.3

Gene sequence:

>1215_bases
ATGATAACCTTTTGGCTGATAGTGCTACTGTTGCTGGCCGTCGCCGCAGCGCTATTGTTGATCCCGGCGCTGCGTACGCC
GCGCGGCAACGACGGGGCGGATCGCGATCGCCTGAATACCCAGCTGTACCATCAGCGCCTGCGTGAACTGGAGCAGGATG
AGGCGCAGGGGCTGGTGGAAGGCCACGCGGAGATGTTGACGGATCTGCAGCATAACCTGCTGAATGATGTGCCGAAGCAG
GCGGTGCAGCGTGTTCAGCCGATCGGGCGCTGGGCGTTGCTGCCGGGCGTGCTGGTGTTGGTGGCGCTGTCGTTGGGCTG
TTACCTGAAAACCGGTGGCTGGAGTCAGGTGGCCGAGTGGCGGCAAGTGATGACGCAGCTGCCGCAGTTGCGTGGGCGGG
TGATGAGTGAGGATCAGAAGCCGCTGGATCGCGAGGAGCTGACACGCCTGGGGCTGGGGCTGCGCACCGAGCTACAGTCG
CAGCCGGACAACGTGGCGGACTGGGTGATGCTGGGGCGGATCGGGATGACGTTGAATAACGCAACGACGGCCACGCAGGC
TTTTGCCCATGCCTATAAGCTGGCGCCCGGCGAGCCTGAGGTGGCGCTGGGCTATGCTGAGGTTCTGACGCGCTCCAGTG
ACGCACAGGATAACCGCGAGGCCACCGTGCTGCTGCGTCGTCTGCTTAGCCAGGATCACCAGAATACTCAGGTGCTGAGC
CTACTGGCGTTTAACGCTTTCGAACAGGGCGAGTTCCGCCAGGCGATCGGTGCCTGGGAGATGATGCTGAAGCTGCTGCC
GCCAGATGATCGGCGCCGTGATATGATCGAACGCAGCATTGCGCAGGCGCGGGTACAGGCGGGAACCGATGCTGCGCAGG
TGCGGGTCGAGATCAGCATGGATCCGGCACTCGAGCGTCAGCTACCGTCCGGCAGTCAGCTGATGATTACCCTGACCGAC
GGCAACAACCCGCTGCCGGTGGCGGTGAAACGGCTACCGCTGGGCCATTTCCCGCAGACGGTGACCCTGTCAGATAGCGA
TGCGATGATGCCGGATCGGCTGCTCTCTTCGCTGGCGCAGTTTAAAATACGGGTATTGGTGGTGCCGCCGGGCGCAGAGG
CGGACGGGCAGAGCGATGTGTTCGGAGAAAGTGCCGTTTTACGCTATACTAGCGGTAAAATGGTGGCGATAACCCTTAGC
CGTCAGGTACCTTAA

Upstream 100 bases:

>100_bases
TGGCGCTGCGCGATAGCGAGGTGGCGCAGGCTGACCTCAGCGAGGCCGAGCGGCAGCGCCTGCGGCGCTTGCTTAACCAA
GAGCGTGACGGAGAGCCGCG

Downstream 100 bases:

>100_bases
GCGGCTGGGCGAAGTGTAAGGCTGTTGAAGGGCGCCCCGTTGAGGGGCGCTCTGGTTTATGGAGCAAATTATGAAATCTC
GTCTGGCGGGGGTGGCCCTG

Product: tetratricopeptide TPR_2 repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MITFWLIVLLLLAVAAALLLIPALRTPRGNDGADRDRLNTQLYHQRLRELEQDEAQGLVEGHAEMLTDLQHNLLNDVPKQ
AVQRVQPIGRWALLPGVLVLVALSLGCYLKTGGWSQVAEWRQVMTQLPQLRGRVMSEDQKPLDREELTRLGLGLRTELQS
QPDNVADWVMLGRIGMTLNNATTATQAFAHAYKLAPGEPEVALGYAEVLTRSSDAQDNREATVLLRRLLSQDHQNTQVLS
LLAFNAFEQGEFRQAIGAWEMMLKLLPPDDRRRDMIERSIAQARVQAGTDAAQVRVEISMDPALERQLPSGSQLMITLTD
GNNPLPVAVKRLPLGHFPQTVTLSDSDAMMPDRLLSSLAQFKIRVLVVPPGAEADGQSDVFGESAVLRYTSGKMVAITLS
RQVP

Sequences:

>Translated_404_residues
MITFWLIVLLLLAVAAALLLIPALRTPRGNDGADRDRLNTQLYHQRLRELEQDEAQGLVEGHAEMLTDLQHNLLNDVPKQ
AVQRVQPIGRWALLPGVLVLVALSLGCYLKTGGWSQVAEWRQVMTQLPQLRGRVMSEDQKPLDREELTRLGLGLRTELQS
QPDNVADWVMLGRIGMTLNNATTATQAFAHAYKLAPGEPEVALGYAEVLTRSSDAQDNREATVLLRRLLSQDHQNTQVLS
LLAFNAFEQGEFRQAIGAWEMMLKLLPPDDRRRDMIERSIAQARVQAGTDAAQVRVEISMDPALERQLPSGSQLMITLTD
GNNPLPVAVKRLPLGHFPQTVTLSDSDAMMPDRLLSSLAQFKIRVLVVPPGAEADGQSDVFGESAVLRYTSGKMVAITLS
RQVP
>Mature_404_residues
MITFWLIVLLLLAVAAALLLIPALRTPRGNDGADRDRLNTQLYHQRLRELEQDEAQGLVEGHAEMLTDLQHNLLNDVPKQ
AVQRVQPIGRWALLPGVLVLVALSLGCYLKTGGWSQVAEWRQVMTQLPQLRGRVMSEDQKPLDREELTRLGLGLRTELQS
QPDNVADWVMLGRIGMTLNNATTATQAFAHAYKLAPGEPEVALGYAEVLTRSSDAQDNREATVLLRRLLSQDHQNTQVLS
LLAFNAFEQGEFRQAIGAWEMMLKLLPPDDRRRDMIERSIAQARVQAGTDAAQVRVEISMDPALERQLPSGSQLMITLTD
GNNPLPVAVKRLPLGHFPQTVTLSDSDAMMPDRLLSSLAQFKIRVLVVPPGAEADGQSDVFGESAVLRYTSGKMVAITLS
RQVP

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=206, Percent_Identity=50.9708737864078, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 44735; Mature: 44735

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITFWLIVLLLLAVAAALLLIPALRTPRGNDGADRDRLNTQLYHQRLRELEQDEAQGLVE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GHAEMLTDLQHNLLNDVPKQAVQRVQPIGRWALLPGVLVLVALSLGCYLKTGGWSQVAEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHH
RQVMTQLPQLRGRVMSEDQKPLDREELTRLGLGLRTELQSQPDNVADWVMLGRIGMTLNN
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHCCEECC
ATTATQAFAHAYKLAPGEPEVALGYAEVLTRSSDAQDNREATVLLRRLLSQDHQNTQVLS
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LLAFNAFEQGEFRQAIGAWEMMLKLLPPDDRRRDMIERSIAQARVQAGTDAAQVRVEISM
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
DPALERQLPSGSQLMITLTDGNNPLPVAVKRLPLGHFPQTVTLSDSDAMMPDRLLSSLAQ
CHHHHHCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH
FKIRVLVVPPGAEADGQSDVFGESAVLRYTSGKMVAITLSRQVP
CEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCC
>Mature Secondary Structure
MITFWLIVLLLLAVAAALLLIPALRTPRGNDGADRDRLNTQLYHQRLRELEQDEAQGLVE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GHAEMLTDLQHNLLNDVPKQAVQRVQPIGRWALLPGVLVLVALSLGCYLKTGGWSQVAEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHH
RQVMTQLPQLRGRVMSEDQKPLDREELTRLGLGLRTELQSQPDNVADWVMLGRIGMTLNN
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHCCEECC
ATTATQAFAHAYKLAPGEPEVALGYAEVLTRSSDAQDNREATVLLRRLLSQDHQNTQVLS
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LLAFNAFEQGEFRQAIGAWEMMLKLLPPDDRRRDMIERSIAQARVQAGTDAAQVRVEISM
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
DPALERQLPSGSQLMITLTDGNNPLPVAVKRLPLGHFPQTVTLSDSDAMMPDRLLSSLAQ
CHHHHHCCCCCCEEEEEEECCCCCCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHH
FKIRVLVVPPGAEADGQSDVFGESAVLRYTSGKMVAITLSRQVP
CEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]