| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is yfcM [H]
Identifier: 238920618
GI number: 238920618
Start: 2622637
End: 2623185
Strand: Reverse
Name: yfcM [H]
Synonym: NT01EI_2730
Alternate gene names: 238920618
Gene position: 2623185-2622637 (Counterclockwise)
Preceding gene: 238920619
Following gene: 238920617
Centisome position: 68.81
GC content: 60.11
Gene sequence:
>549_bases ATGCCCGAGATCCATCATTATCAGCAGTTAATCGATCTGTTCGCGCAGACGTTCGGCAGCGAATACCATACCCGCCTGGT GGCCGGCGACGGCGAACCTATCTATCTGCCGGCGGATGACGCGCATCCGGAGCACCGCATTCTGTTTGCCCATGGCTACT ATGCCAGCGCGCTGCATGAGATCTCACACTGGTGCATCGCCGGGGAGGCACGTCGCCGCCTGGAGGACTATGGCTATTGG TACTGCCCGGACGGGCGGGATACCGACACGCAGTCGCGCTTTGAGGCGGTAGAGATTAAGCCACAGGCACTGGACTGGCT GTTCTGCGTTGCTGCCGGCTATCCCTTTAACGTCAGCTGCGATAATCTGGAGGGCACCTTCGAGCCGGATCGCATCGCGT TTCAGCGCCGGGTGCGTGAACAGGTGCTGATCTATCTGGCCGGGGGCATCCCCCCGCGTCCGGCGCAGTTTATCCGTACG CTTCAGGCGTTTTATCATACGCCGGCACTGAGTGCCGCTGACTTTCCCTATCCCGACGATTTACAGTGA
Upstream 100 bases:
>100_bases CGCGGCGGATGCAAGGCGGCGGCGCCTGTGCGACAATCTGCCACCGTGATGCGGCGCCGTGGCGCCGCACGTTATTTTCT CATCAGGCCCAGAGATAACC
Downstream 100 bases:
>100_bases TGCGCGGTGCAGCTGACGCCGATACGCAAGGAATCCCCATGATTGTAGAGTTTGAAGAGCGTATTTTGACGCTGATTGAT GAGATGGTTGACAGCGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MPEIHHYQQLIDLFAQTFGSEYHTRLVAGDGEPIYLPADDAHPEHRILFAHGYYASALHEISHWCIAGEARRRLEDYGYW YCPDGRDTDTQSRFEAVEIKPQALDWLFCVAAGYPFNVSCDNLEGTFEPDRIAFQRRVREQVLIYLAGGIPPRPAQFIRT LQAFYHTPALSAADFPYPDDLQ
Sequences:
>Translated_182_residues MPEIHHYQQLIDLFAQTFGSEYHTRLVAGDGEPIYLPADDAHPEHRILFAHGYYASALHEISHWCIAGEARRRLEDYGYW YCPDGRDTDTQSRFEAVEIKPQALDWLFCVAAGYPFNVSCDNLEGTFEPDRIAFQRRVREQVLIYLAGGIPPRPAQFIRT LQAFYHTPALSAADFPYPDDLQ >Mature_181_residues PEIHHYQQLIDLFAQTFGSEYHTRLVAGDGEPIYLPADDAHPEHRILFAHGYYASALHEISHWCIAGEARRRLEDYGYWY CPDGRDTDTQSRFEAVEIKPQALDWLFCVAAGYPFNVSCDNLEGTFEPDRIAFQRRVREQVLIYLAGGIPPRPAQFIRTL QAFYHTPALSAADFPYPDDLQ
Specific function: Unknown
COG id: COG3101
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_1563 [H]
Homologues:
Organism=Escherichia coli, GI1788666, Length=182, Percent_Identity=68.6813186813187, Blast_Score=277, Evalue=4e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007411 [H]
Pfam domain/function: PF04315 DUF462 [H]
EC number: NA
Molecular weight: Translated: 20937; Mature: 20805
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEIHHYQQLIDLFAQTFGSEYHTRLVAGDGEPIYLPADDAHPEHRILFAHGYYASALHE CCCHHHHHHHHHHHHHHHCCCHHEEEEECCCCEEEECCCCCCCCCEEEEECCHHHHHHHH ISHWCIAGEARRRLEDYGYWYCPDGRDTDTQSRFEAVEIKPQALDWLFCVAAGYPFNVSC HHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHEEEEECHHHHHHHHHHHCCCCCCCEE DNLEGTFEPDRIAFQRRVREQVLIYLAGGIPPRPAQFIRTLQAFYHTPALSAADFPYPDD CCCCCCCCHHHHHHHHHHHHHHEEHEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC LQ CC >Mature Secondary Structure PEIHHYQQLIDLFAQTFGSEYHTRLVAGDGEPIYLPADDAHPEHRILFAHGYYASALHE CCHHHHHHHHHHHHHHHCCCHHEEEEECCCCEEEECCCCCCCCCEEEEECCHHHHHHHH ISHWCIAGEARRRLEDYGYWYCPDGRDTDTQSRFEAVEIKPQALDWLFCVAAGYPFNVSC HHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHEEEEECHHHHHHHHHHHCCCCCCCEE DNLEGTFEPDRIAFQRRVREQVLIYLAGGIPPRPAQFIRTLQAFYHTPALSAADFPYPDD CCCCCCCCHHHHHHHHHHHHHHEEHEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC LQ CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]