Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 238920570

GI number: 238920570

Start: 2578024

End: 2578227

Strand: Reverse

Name: pecT [H]

Synonym: NT01EI_2681

Alternate gene names: 238920570

Gene position: 2578227-2578024 (Counterclockwise)

Preceding gene: 238920571

Following gene: 238920568

Centisome position: 67.63

GC content: 55.88

Gene sequence:

>204_bases
ATGAGCCACGGACCACGTCCCCCCATCAATCTGGATTTGGATTTATTGCGCACCTTTGTTGCAGTGGCCGATGTGAAGAC
GTTTGCCGCTGCTGCCACACGGGTGCAACGCACACAGTCTGCCGTGAGTCAACAAATGCAGCGCCTGGAGCTGCTGGTGG
GAAAAGAGCTGTTTGCCCGCAAAGGACGCAATAAGAGCCGCTAA

Upstream 100 bases:

>100_bases
ATTTATTCATGGCTGTATGTCTGATGAAGCAGGTGCTTAAAGATTATCTTATGTTGTGAACACCAAGGTAAACTGTTTTT
GATTAATAACGAGAAAATAT

Downstream 100 bases:

>100_bases
CAAAACCGTTCAACAAAGCGCAAGCAGATAACAGCACAAGCCAGCGTCAGCAAGGCAAGATGGGTATCCAGCCGCCGTTC
GAAGCGAATACGCAGCTTGC

Product: HTH-type transcriptional regulator PecT

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MSHGPRPPINLDLDLLRTFVAVADVKTFAAAATRVQRTQSAVSQQMQRLELLVGKELFARKGRNKSR

Sequences:

>Translated_67_residues
MSHGPRPPINLDLDLLRTFVAVADVKTFAAAATRVQRTQSAVSQQMQRLELLVGKELFARKGRNKSR
>Mature_66_residues
SHGPRPPINLDLDLLRTFVAVADVKTFAAAATRVQRTQSAVSQQMQRLELLVGKELFARKGRNKSR

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=60, Percent_Identity=86.6666666666667, Blast_Score=95, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 7491; Mature: 7360

Theoretical pI: Translated: 12.08; Mature: 12.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHGPRPPINLDLDLLRTFVAVADVKTFAAAATRVQRTQSAVSQQMQRLELLVGKELFAR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGRNKSR
CCCCCCC
>Mature Secondary Structure 
SHGPRPPINLDLDLLRTFVAVADVKTFAAAATRVQRTQSAVSQQMQRLELLVGKELFAR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGRNKSR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]