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The map label for this gene is lrhA [H]

Identifier: 238920568

GI number: 238920568

Start: 2576455

End: 2577147

Strand: Reverse

Name: lrhA [H]

Synonym: NT01EI_2680

Alternate gene names: 238920568

Gene position: 2577147-2576455 (Counterclockwise)

Preceding gene: 238920570

Following gene: 238920567

Centisome position: 67.6

GC content: 59.74

Gene sequence:

>693_bases
GTGCAGTTGTTAAACTATGCCCGCAAAATCCTGCGTTTTAATGACGAGGCCTGCCACTCCCTGATCAACGATCACCTGCA
GGGGAGGCTGGTGGTGGGGGCGACCGACGACAGCGCCGACAGTATCCTGCCGCAGCTGCTGGGCCGCTTTACCGCGCTAT
ACCCCAAGCTGGCAATTGATGTACGTATGCAGCGCAACGCCGATATTCAGCTGATGCTGTTGGATAATGAGGTTGATCTG
GCTGTTTCAATGGGGTGTGAGCCGTCTTTGTCCAGTACTCTGCTGCGCCGATCTCCGACGGTGTGGTTTTGCGCCACCGA
CTATGACTTTACGCCCGGCATACCGATAGAACTGGTGGTGCTGGATGAGCCGAGCACTTTCCGCAGTCTGGCAACTACGG
CGCTGGATGCTGCCGGTTTGCCCTGGCGTCTGGCCTATGTCGCATCGACGTTGCCGGCCCTGCGGGCGGCGCTGAAGGCA
GGGCTGGGGATCTCGGCCCGCCCGATCGAGATGATGAGCTCATCACTGCGGGTACTGGGCGAGGCGGGTGGTCTGCCGCG
TCTGGCGGATACCGAGTATAACCTCTGTCTGGCGCCACAGTGTCGTAATCCGCTGGCAGTGACGTTGTTTGATGCGCTGC
GCGAGGGAGATGAAGGGGGCGTCACCACCTCGAGAGAGACAGACAAAGATTGA

Upstream 100 bases:

>100_bases
TTACTGATGATTTTTCGTGTCATGCCTACTATATGGGAATTGATGTTATTCGAATCAACTCGGTTTTGTTAGCGGCTCTA
AGTATCTGACGGATCACGGC

Downstream 100 bases:

>100_bases
TAAAGAAAAATGATAAATCACTGTGAATATCAATTAATCTAACGATATATCATTTTATTAAAGAATTAATTTACATTAAT
CATCCCGGCGTCTGGCGCCG

Product: HTH-type transcriptional regulator PecT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQLLNYARKILRFNDEACHSLINDHLQGRLVVGATDDSADSILPQLLGRFTALYPKLAIDVRMQRNADIQLMLLDNEVDL
AVSMGCEPSLSSTLLRRSPTVWFCATDYDFTPGIPIELVVLDEPSTFRSLATTALDAAGLPWRLAYVASTLPALRAALKA
GLGISARPIEMMSSSLRVLGEAGGLPRLADTEYNLCLAPQCRNPLAVTLFDALREGDEGGVTTSRETDKD

Sequences:

>Translated_230_residues
MQLLNYARKILRFNDEACHSLINDHLQGRLVVGATDDSADSILPQLLGRFTALYPKLAIDVRMQRNADIQLMLLDNEVDL
AVSMGCEPSLSSTLLRRSPTVWFCATDYDFTPGIPIELVVLDEPSTFRSLATTALDAAGLPWRLAYVASTLPALRAALKA
GLGISARPIEMMSSSLRVLGEAGGLPRLADTEYNLCLAPQCRNPLAVTLFDALREGDEGGVTTSRETDKD
>Mature_230_residues
MQLLNYARKILRFNDEACHSLINDHLQGRLVVGATDDSADSILPQLLGRFTALYPKLAIDVRMQRNADIQLMLLDNEVDL
AVSMGCEPSLSSTLLRRSPTVWFCATDYDFTPGIPIELVVLDEPSTFRSLATTALDAAGLPWRLAYVASTLPALRAALKA
GLGISARPIEMMSSSLRVLGEAGGLPRLADTEYNLCLAPQCRNPLAVTLFDALREGDEGGVTTSRETDKD

Specific function: Not known, does not seem to act on the proton translocating NADH dehydrogenase genes (nuoA-N) which are part of the lrhA operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=213, Percent_Identity=56.8075117370892, Blast_Score=241, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 25037; Mature: 25037

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLNYARKILRFNDEACHSLINDHLQGRLVVGATDDSADSILPQLLGRFTALYPKLAID
CCHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEE
VRMQRNADIQLMLLDNEVDLAVSMGCEPSLSSTLLRRSPTVWFCATDYDFTPGIPIELVV
EEEECCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEEE
LDEPSTFRSLATTALDAAGLPWRLAYVASTLPALRAALKAGLGISARPIEMMSSSLRVLG
ECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
EAGGLPRLADTEYNLCLAPQCRNPLAVTLFDALREGDEGGVTTSRETDKD
HCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQLLNYARKILRFNDEACHSLINDHLQGRLVVGATDDSADSILPQLLGRFTALYPKLAID
CCHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEE
VRMQRNADIQLMLLDNEVDLAVSMGCEPSLSSTLLRRSPTVWFCATDYDFTPGIPIELVV
EEEECCCCEEEEEECCCCCEEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEEE
LDEPSTFRSLATTALDAAGLPWRLAYVASTLPALRAALKAGLGISARPIEMMSSSLRVLG
ECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
EAGGLPRLADTEYNLCLAPQCRNPLAVTLFDALREGDEGGVTTSRETDKD
HCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]