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The map label for this gene is ybiH [H]

Identifier: 238920510

GI number: 238920510

Start: 2509306

End: 2510046

Strand: Direct

Name: ybiH [H]

Synonym: NT01EI_2622

Alternate gene names: 238920510

Gene position: 2509306-2510046 (Clockwise)

Preceding gene: 238920508

Following gene: 238920511

Centisome position: 65.82

GC content: 63.16

Gene sequence:

>741_bases
TTGACTTTTAACGAGGTCGCGATGACAACGCCCTGCATCAATTCGGTGATGGCCAGCACAACGCCCCGCGGCAAACAGGC
GCGTCAGTCCCTGATCGATGCCGGGCTGACCCTGTTTGCGCAACGGGGACTGGAGGGGGCCACCACCCGCGATATCGCGC
TGGCCTCTGGGCAGAACATCGCTGCCATCACCTACTACTTTCACTCCAAGCAGGGGCTCTATCTGGCCGTCGCCCAGTGG
ATTGCCGATACCCTCAACGCCAGCTTCCACCCCCTGCGCACGGAGTGCGAACGCTTTCTGAGTCGGTCAGACGCAACGCC
GCAGGCCTATCTGGCGCTGATCCAGCGCGCCATCGCTCACCTGTGTCATCTGATGACCCAGCCGCAGACCCTGCACCTGA
GCCAGATTATCTCACGGGAGCAGATGCTGCCCAGCGCCGCCTCGCCCATTCTGCACGATCAGTTTATTTCGCCGCTGCAC
ACCCTGATGACCCGTCTGGTGGCCGGCTATGCCGGGCTAGACGCGACGCAGCCGGCGGCGGCGCTGCACACCCATGCGCT
GATCGGCCAGGTTCTGGCATTTCGCATGGCGCGTGAAACCATACTGAACCGCACCGGCTGGCCCCAGATAGGTCCGGCCC
AGGCGCAGGCGATCCATGAGGTCGTGCAGATGCATACCGAGCTGCTGATGAACGGGCTGCGTCAACGCGGCGTCGTCGGG
AACGTGAGGAAACCATCATGA

Upstream 100 bases:

>100_bases
CAGTGTAACAGCATGTACCCGCGCTGTCTGCCCCCCATTACGCTCCCGTCACCCGCTTTACAGCGGCGAAAAAAACGCCT
AAAGTTAATCAATCATATGA

Downstream 100 bases:

>100_bases
ATAAAAGGCGTATCACAGGCGTGGTCATCGGTGTCGTACTGATTGCCCTGGCCTGCGCGGGATATGACTACTACCGCAGC
CAGCAGGATCAGCCGCTGAC

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTFNEVAMTTPCINSVMASTTPRGKQARQSLIDAGLTLFAQRGLEGATTRDIALASGQNIAAITYYFHSKQGLYLAVAQW
IADTLNASFHPLRTECERFLSRSDATPQAYLALIQRAIAHLCHLMTQPQTLHLSQIISREQMLPSAASPILHDQFISPLH
TLMTRLVAGYAGLDATQPAAALHTHALIGQVLAFRMARETILNRTGWPQIGPAQAQAIHEVVQMHTELLMNGLRQRGVVG
NVRKPS

Sequences:

>Translated_246_residues
MTFNEVAMTTPCINSVMASTTPRGKQARQSLIDAGLTLFAQRGLEGATTRDIALASGQNIAAITYYFHSKQGLYLAVAQW
IADTLNASFHPLRTECERFLSRSDATPQAYLALIQRAIAHLCHLMTQPQTLHLSQIISREQMLPSAASPILHDQFISPLH
TLMTRLVAGYAGLDATQPAAALHTHALIGQVLAFRMARETILNRTGWPQIGPAQAQAIHEVVQMHTELLMNGLRQRGVVG
NVRKPS
>Mature_245_residues
TFNEVAMTTPCINSVMASTTPRGKQARQSLIDAGLTLFAQRGLEGATTRDIALASGQNIAAITYYFHSKQGLYLAVAQWI
ADTLNASFHPLRTECERFLSRSDATPQAYLALIQRAIAHLCHLMTQPQTLHLSQIISREQMLPSAASPILHDQFISPLHT
LMTRLVAGYAGLDATQPAAALHTHALIGQVLAFRMARETILNRTGWPQIGPAQAQAIHEVVQMHTELLMNGLRQRGVVGN
VRKPS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=218, Percent_Identity=48.1651376146789, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26940; Mature: 26808

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFNEVAMTTPCINSVMASTTPRGKQARQSLIDAGLTLFAQRGLEGATTRDIALASGQNI
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCE
AAITYYFHSKQGLYLAVAQWIADTLNASFHPLRTECERFLSRSDATPQAYLALIQRAIAH
EEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LCHLMTQPQTLHLSQIISREQMLPSAASPILHDQFISPLHTLMTRLVAGYAGLDATQPAA
HHHHHCCCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ALHTHALIGQVLAFRMARETILNRTGWPQIGPAQAQAIHEVVQMHTELLMNGLRQRGVVG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NVRKPS
CCCCCC
>Mature Secondary Structure 
TFNEVAMTTPCINSVMASTTPRGKQARQSLIDAGLTLFAQRGLEGATTRDIALASGQNI
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCE
AAITYYFHSKQGLYLAVAQWIADTLNASFHPLRTECERFLSRSDATPQAYLALIQRAIAH
EEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LCHLMTQPQTLHLSQIISREQMLPSAASPILHDQFISPLHTLMTRLVAGYAGLDATQPAA
HHHHHCCCCHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ALHTHALIGQVLAFRMARETILNRTGWPQIGPAQAQAIHEVVQMHTELLMNGLRQRGVVG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NVRKPS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]