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The map label for this gene is ycgG [H]

Identifier: 238920472

GI number: 238920472

Start: 2477000

End: 2478544

Strand: Reverse

Name: ycgG [H]

Synonym: NT01EI_2583

Alternate gene names: 238920472

Gene position: 2478544-2477000 (Counterclockwise)

Preceding gene: 238920473

Following gene: 238920471

Centisome position: 65.01

GC content: 58.06

Gene sequence:

>1545_bases
ATGATTCCTCTGGGCGGCGAACGATGGCGCAGCTATCTGCGTCCGCTGCTGTCTGCGGGCGCGGTGGGTATGGTGCTGCT
ATTGGCTACTGTTACCATCTCCTGGCAGGCCTCTCGGGGGTTGGCAGAGTCGGCAAAACAGCGCCTGACGCTGGCTATCG
GGCAGATCGATGAGGCGCTGGACAATGCCCAGACGGCGGTCGATGCGGTCCGGCGCTATGCCGGACAGCCCTGTGATACG
ACATTGCATAATATGCTGGCATTTCAGGCGACAACGGTACCCGATGTGCGTTCGGTCAGTCTGGCGCAGGCGAGCGTTAT
CTACTGCTCCTCTCTCTACGGTGCCTTTCATGCTGAAGTCGGCGATGACCATTACACCAATAAGCGCTTGACCCTGATGT
CTGGCAATCGGATTACACCGCATCGCTCGCTGGTGGTGTTTCGTGAACCTGGGCCGGGAGATGCCAGCGTGCTGGTGGGG
ATAGACGGTTACTATCTGCGGAATATTCTGAGGTCGCTCAGTACCCCGACACCGCTGTATTTGCGTATCGGTGCGGGCTG
GATGGATCCTCAGGGGCAGGTCGTCGATGCGTTGCCGCCGGTGGACGGGCGTCGCTTTGTCCGTCATTCGTCACGCTACC
CGATCTCGGTCACCACGGCCGTTCCGATCGATAGTCACTGGACGTATATGCTGGACTACTCCCGCGGCAGCCTGGTGCTG
TTCCTGGTGCTGGCCTTCGTTTTTGGGGTTGGCACCTACCGTTTGGTGGGGCAGGTAAATTCGCCGGTTTTCTATCTGCG
CGAGGCGCTGCGGCAGCGCCAGTTTATCCCCTATATTCAGCCGGTGGTCGATGGCGCGGATGAGTCGCTGAGCGGCTGCG
AGATCCTGATGCGCTGGCAGCACCCCCAGATGGGATTGATCCCGCCGAATAACTTCATCCCATTGGCGGAGGACAGCGGC
CTTATCGTAGCGATGACGCGCGATATTATGCGGCAGGTCAGCGATTATTTTGCGCCGCGCTGCCGTAGCCTGCCGACGCA
TTTTCACTTTGGTTTCAATATCAGCGCCAGCCATTTTAACGATTTGAGTCTGGTTGAGGAGTGTCGACGCTTTATTGATG
CCTTTGAAGCCAATCCGATCCGGCTGGTGCTGGAGCTGACCGAGCGTCAGCGGGTGCCGGACGGCGAGCTGACGGAGCAA
ATCTTTCACAAGTTGCGGGGGTTGGGGGTACTGCTGGCGCTGGATGATTTTGGCACCGGACACTCCAGCCTAGCCTATCT
ACAGCGTTACCACTTTGACATTATAAAAATCGATCGAAGCTTTGTGCGGATGATCGGCAGCGATATGCTGTCGGGACACA
TTGTGGATACGGTGATCGCGCTGGCCAAGCGACTGGATATGATTACCCTGGCGGAAGGGGTTGAGAGCGGGGAACAGCTA
CAGCATCTGCGCGGCTATCGGCTGGATTATCTGCAGGGATACCTGTTTGGCTGCCCGCAGCCGTTGCCTGATTTTACCCG
GGAATGGTTGAAGAGCGTCGTTTAG

Upstream 100 bases:

>100_bases
CCTTTCCCTTGTTACAGCCTCTGCGTGTGGGGCAGTCTATACGCGGCACGCTCTGCCTACGCGCTGAACGGGTGCGCTGA
GCGGGAGGTAACAAACGCAA

Downstream 100 bases:

>100_bases
CGGGCGCGTCAGTAGCGCCAGAGATGACCCCGGGCGGAGGTCCGGGACACGGCCTCTACCAGATAGGTGTTATTCAATGT
TTGTATGATTTATGTGCGGT

Product: cyclic diguanylate phosphodiesterase (EAL)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MIPLGGERWRSYLRPLLSAGAVGMVLLLATVTISWQASRGLAESAKQRLTLAIGQIDEALDNAQTAVDAVRRYAGQPCDT
TLHNMLAFQATTVPDVRSVSLAQASVIYCSSLYGAFHAEVGDDHYTNKRLTLMSGNRITPHRSLVVFREPGPGDASVLVG
IDGYYLRNILRSLSTPTPLYLRIGAGWMDPQGQVVDALPPVDGRRFVRHSSRYPISVTTAVPIDSHWTYMLDYSRGSLVL
FLVLAFVFGVGTYRLVGQVNSPVFYLREALRQRQFIPYIQPVVDGADESLSGCEILMRWQHPQMGLIPPNNFIPLAEDSG
LIVAMTRDIMRQVSDYFAPRCRSLPTHFHFGFNISASHFNDLSLVEECRRFIDAFEANPIRLVLELTERQRVPDGELTEQ
IFHKLRGLGVLLALDDFGTGHSSLAYLQRYHFDIIKIDRSFVRMIGSDMLSGHIVDTVIALAKRLDMITLAEGVESGEQL
QHLRGYRLDYLQGYLFGCPQPLPDFTREWLKSVV

Sequences:

>Translated_514_residues
MIPLGGERWRSYLRPLLSAGAVGMVLLLATVTISWQASRGLAESAKQRLTLAIGQIDEALDNAQTAVDAVRRYAGQPCDT
TLHNMLAFQATTVPDVRSVSLAQASVIYCSSLYGAFHAEVGDDHYTNKRLTLMSGNRITPHRSLVVFREPGPGDASVLVG
IDGYYLRNILRSLSTPTPLYLRIGAGWMDPQGQVVDALPPVDGRRFVRHSSRYPISVTTAVPIDSHWTYMLDYSRGSLVL
FLVLAFVFGVGTYRLVGQVNSPVFYLREALRQRQFIPYIQPVVDGADESLSGCEILMRWQHPQMGLIPPNNFIPLAEDSG
LIVAMTRDIMRQVSDYFAPRCRSLPTHFHFGFNISASHFNDLSLVEECRRFIDAFEANPIRLVLELTERQRVPDGELTEQ
IFHKLRGLGVLLALDDFGTGHSSLAYLQRYHFDIIKIDRSFVRMIGSDMLSGHIVDTVIALAKRLDMITLAEGVESGEQL
QHLRGYRLDYLQGYLFGCPQPLPDFTREWLKSVV
>Mature_514_residues
MIPLGGERWRSYLRPLLSAGAVGMVLLLATVTISWQASRGLAESAKQRLTLAIGQIDEALDNAQTAVDAVRRYAGQPCDT
TLHNMLAFQATTVPDVRSVSLAQASVIYCSSLYGAFHAEVGDDHYTNKRLTLMSGNRITPHRSLVVFREPGPGDASVLVG
IDGYYLRNILRSLSTPTPLYLRIGAGWMDPQGQVVDALPPVDGRRFVRHSSRYPISVTTAVPIDSHWTYMLDYSRGSLVL
FLVLAFVFGVGTYRLVGQVNSPVFYLREALRQRQFIPYIQPVVDGADESLSGCEILMRWQHPQMGLIPPNNFIPLAEDSG
LIVAMTRDIMRQVSDYFAPRCRSLPTHFHFGFNISASHFNDLSLVEECRRFIDAFEANPIRLVLELTERQRVPDGELTEQ
IFHKLRGLGVLLALDDFGTGHSSLAYLQRYHFDIIKIDRSFVRMIGSDMLSGHIVDTVIALAKRLDMITLAEGVESGEQL
QHLRGYRLDYLQGYLFGCPQPLPDFTREWLKSVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential). Note=Found associated with the RNA degradosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=458, Percent_Identity=32.3144104803493, Blast_Score=230, Evalue=2e-61,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=45.8677685950413, Blast_Score=228, Evalue=7e-61,
Organism=Escherichia coli, GI87081980, Length=507, Percent_Identity=30.9664694280079, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI1788502, Length=266, Percent_Identity=39.0977443609023, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI87081743, Length=270, Percent_Identity=33.3333333333333, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1787541, Length=252, Percent_Identity=36.9047619047619, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=33.0739299610895, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.8641975308642, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081921, Length=251, Percent_Identity=33.0677290836653, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082096, Length=253, Percent_Identity=31.2252964426877, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI226510982, Length=250, Percent_Identity=30.4, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787055, Length=254, Percent_Identity=30.7086614173228, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 57575; Mature: 57575

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLGGERWRSYLRPLLSAGAVGMVLLLATVTISWQASRGLAESAKQRLTLAIGQIDEAL
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHHHHHHHH
DNAQTAVDAVRRYAGQPCDTTLHNMLAFQATTVPDVRSVSLAQASVIYCSSLYGAFHAEV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GDDHYTNKRLTLMSGNRITPHRSLVVFREPGPGDASVLVGIDGYYLRNILRSLSTPTPLY
CCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCCCCEE
LRIGAGWMDPQGQVVDALPPVDGRRFVRHSSRYPISVTTAVPIDSHWTYMLDYSRGSLVL
EEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCHHHH
FLVLAFVFGVGTYRLVGQVNSPVFYLREALRQRQFIPYIQPVVDGADESLSGCEILMRWQ
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHEEC
HPQMGLIPPNNFIPLAEDSGLIVAMTRDIMRQVSDYFAPRCRSLPTHFHFGFNISASHFN
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCHHHHCCCCEEEECEEECCCCCC
DLSLVEECRRFIDAFEANPIRLVLELTERQRVPDGELTEQIFHKLRGLGVLLALDDFGTG
CHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCC
HSSLAYLQRYHFDIIKIDRSFVRMIGSDMLSGHIVDTVIALAKRLDMITLAEGVESGEQL
HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QHLRGYRLDYLQGYLFGCPQPLPDFTREWLKSVV
HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MIPLGGERWRSYLRPLLSAGAVGMVLLLATVTISWQASRGLAESAKQRLTLAIGQIDEAL
CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHHHHHHHH
DNAQTAVDAVRRYAGQPCDTTLHNMLAFQATTVPDVRSVSLAQASVIYCSSLYGAFHAEV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
GDDHYTNKRLTLMSGNRITPHRSLVVFREPGPGDASVLVGIDGYYLRNILRSLSTPTPLY
CCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCCCCEE
LRIGAGWMDPQGQVVDALPPVDGRRFVRHSSRYPISVTTAVPIDSHWTYMLDYSRGSLVL
EEECCCCCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCHHHH
FLVLAFVFGVGTYRLVGQVNSPVFYLREALRQRQFIPYIQPVVDGADESLSGCEILMRWQ
HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHEEC
HPQMGLIPPNNFIPLAEDSGLIVAMTRDIMRQVSDYFAPRCRSLPTHFHFGFNISASHFN
CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCHHHHCCCCEEEECEEECCCCCC
DLSLVEECRRFIDAFEANPIRLVLELTERQRVPDGELTEQIFHKLRGLGVLLALDDFGTG
CHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCC
HSSLAYLQRYHFDIIKIDRSFVRMIGSDMLSGHIVDTVIALAKRLDMITLAEGVESGEQL
HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH
QHLRGYRLDYLQGYLFGCPQPLPDFTREWLKSVV
HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]