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The map label for this gene is ybjS [H]

Identifier: 238920401

GI number: 238920401

Start: 2412318

End: 2413328

Strand: Direct

Name: ybjS [H]

Synonym: NT01EI_2511

Alternate gene names: 238920401

Gene position: 2412318-2413328 (Clockwise)

Preceding gene: 238920400

Following gene: 238920404

Centisome position: 63.28

GC content: 59.74

Gene sequence:

>1011_bases
ATGAAAGTTTTAGTGACCGGTGCAACCAGCGGTCTCGGGCGTAATGCCGTTGAATATTTACGTCAGCGGGGGATCAGCGT
CCGCGCCGCGGGGGATAATCTGGCCATGGGGCAGATGCTGCAGAAAATGGGGGCAGATTTTATCCACGCCGATCTGAGCA
ACTTGGTATCCGCGCAGGCAAAAGCGATGCTGAACGGCGTCGATACTCTGTGGCACTGCTCTGGATTCACCTCGCCATGG
GGGGCGCAGGCGCTGTTTGAAGCCGCCAACGTACGGGCCACCCGCCGCCTGGGCGAATGGGCTGCTGCCTACGGCGTGGG
TCAGTTTATCCATATTTCCTCCCCCGCCGTCTACTTTGACTATCGCCACCATCACGACATTAAAGAAGAGTTTACGCCTA
CGCGCTACGCCAACTACTATGCGCGCAGCAAGGCTACAGGCGAAGAGGTGATCCGCACCCTGGCGCTGGCCAACCCACAG
ACCCACTTTACCATTCTACGTCCGCAGGGACTGTTTGGTCCCCACGATAAAGTGTTGCTGCCCCGCCTGATGGGTACGAT
GAAAAAGCATGGCTATCTGCTGCTGCCGCACGGCGGCTCCACCCTGCTGGATATGACCTATGAAGAGAACGCGGTGCACG
CTATGTGGCTGGCCACTCAGCACCCCGACACCGCCTCTGGACGGGTATATAACATCACCAACCACCAGCCGCAGACGCTG
CGCCTGATGCTGCAGCAGCTGATCGATGAGCTGGGGATCGCCTGCCGCCTGCGCACGATCCCCTATCCGCTGCTGGATAT
TATCGCCCGCAGTATGGAAAAACTGAGCATGCGCAGCGCCAAAGAGCCGACGTTGACCCACTACGGCGCGGCCAAACTGA
ACTTTGATATGACGCTGGATACCGCCCGGGCACAGAGCGAGCTCGGCTATCAGCCTATCGTGACGCTGGAAGAAGGGATC
GTGCGTACCGCCCGCTGGCTGCGCGACCATGGCCACCTGCAGCACCGCTGA

Upstream 100 bases:

>100_bases
ACACAGTCGGAGCCGAATCGTGTTCCCGGCAGTCAGAACGGCCGCTAACTGGCCGCAACGAATGGCCTGATCAAAGCAGG
CTCACGGTGGATAGGCAAGT

Downstream 100 bases:

>100_bases
GCGATTAACCGGCGGTGCCGTACTGCGCGATCAGCGCATCGACGATAGCAATGGTTTCCGCATCCGGTTCCCCGCGGAAA
TCCGTCGGGCGGAAGTGCAT

Product: 3-beta hydroxysteroid dehydrogenase/isomerase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKVLVTGATSGLGRNAVEYLRQRGISVRAAGDNLAMGQMLQKMGADFIHADLSNLVSAQAKAMLNGVDTLWHCSGFTSPW
GAQALFEAANVRATRRLGEWAAAYGVGQFIHISSPAVYFDYRHHHDIKEEFTPTRYANYYARSKATGEEVIRTLALANPQ
THFTILRPQGLFGPHDKVLLPRLMGTMKKHGYLLLPHGGSTLLDMTYEENAVHAMWLATQHPDTASGRVYNITNHQPQTL
RLMLQQLIDELGIACRLRTIPYPLLDIIARSMEKLSMRSAKEPTLTHYGAAKLNFDMTLDTARAQSELGYQPIVTLEEGI
VRTARWLRDHGHLQHR

Sequences:

>Translated_336_residues
MKVLVTGATSGLGRNAVEYLRQRGISVRAAGDNLAMGQMLQKMGADFIHADLSNLVSAQAKAMLNGVDTLWHCSGFTSPW
GAQALFEAANVRATRRLGEWAAAYGVGQFIHISSPAVYFDYRHHHDIKEEFTPTRYANYYARSKATGEEVIRTLALANPQ
THFTILRPQGLFGPHDKVLLPRLMGTMKKHGYLLLPHGGSTLLDMTYEENAVHAMWLATQHPDTASGRVYNITNHQPQTL
RLMLQQLIDELGIACRLRTIPYPLLDIIARSMEKLSMRSAKEPTLTHYGAAKLNFDMTLDTARAQSELGYQPIVTLEEGI
VRTARWLRDHGHLQHR
>Mature_336_residues
MKVLVTGATSGLGRNAVEYLRQRGISVRAAGDNLAMGQMLQKMGADFIHADLSNLVSAQAKAMLNGVDTLWHCSGFTSPW
GAQALFEAANVRATRRLGEWAAAYGVGQFIHISSPAVYFDYRHHHDIKEEFTPTRYANYYARSKATGEEVIRTLALANPQ
THFTILRPQGLFGPHDKVLLPRLMGTMKKHGYLLLPHGGSTLLDMTYEENAVHAMWLATQHPDTASGRVYNITNHQPQTL
RLMLQQLIDELGIACRLRTIPYPLLDIIARSMEKLSMRSAKEPTLTHYGAAKLNFDMTLDTARAQSELGYQPIVTLEEGI
VRTARWLRDHGHLQHR

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=340, Percent_Identity=27.6470588235294, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI8393516, Length=340, Percent_Identity=27.6470588235294, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI239745448, Length=332, Percent_Identity=25.6024096385542, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310132178, Length=332, Percent_Identity=25, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310113012, Length=332, Percent_Identity=25, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI116268111, Length=352, Percent_Identity=23.0113636363636, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081792, Length=335, Percent_Identity=70.1492537313433, Blast_Score=498, Evalue=1e-142,
Organism=Caenorhabditis elegans, GI17509709, Length=265, Percent_Identity=26.4150943396226, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17570557, Length=232, Percent_Identity=26.7241379310345, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=270, Percent_Identity=28.5185185185185, Blast_Score=88, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37597; Mature: 37597

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVTGATSGLGRNAVEYLRQRGISVRAAGDNLAMGQMLQKMGADFIHADLSNLVSAQA
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
KAMLNGVDTLWHCSGFTSPWGAQALFEAANVRATRRLGEWAAAYGVGQFIHISSPAVYFD
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEE
YRHHHDIKEEFTPTRYANYYARSKATGEEVIRTLALANPQTHFTILRPQGLFGPHDKVLL
CCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
PRLMGTMKKHGYLLLPHGGSTLLDMTYEENAVHAMWLATQHPDTASGRVYNITNHQPQTL
HHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCCHHH
RLMLQQLIDELGIACRLRTIPYPLLDIIARSMEKLSMRSAKEPTLTHYGAAKLNFDMTLD
HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEEEC
TARAQSELGYQPIVTLEEGIVRTARWLRDHGHLQHR
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVLVTGATSGLGRNAVEYLRQRGISVRAAGDNLAMGQMLQKMGADFIHADLSNLVSAQA
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
KAMLNGVDTLWHCSGFTSPWGAQALFEAANVRATRRLGEWAAAYGVGQFIHISSPAVYFD
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEE
YRHHHDIKEEFTPTRYANYYARSKATGEEVIRTLALANPQTHFTILRPQGLFGPHDKVLL
CCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHH
PRLMGTMKKHGYLLLPHGGSTLLDMTYEENAVHAMWLATQHPDTASGRVYNITNHQPQTL
HHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEECCCCCHHH
RLMLQQLIDELGIACRLRTIPYPLLDIIARSMEKLSMRSAKEPTLTHYGAAKLNFDMTLD
HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEEEC
TARAQSELGYQPIVTLEEGIVRTARWLRDHGHLQHR
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]