| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is bcr [H]
Identifier: 238920400
GI number: 238920400
Start: 2410681
End: 2411928
Strand: Direct
Name: bcr [H]
Synonym: NT01EI_2510
Alternate gene names: 238920400
Gene position: 2410681-2411928 (Clockwise)
Preceding gene: 238920399
Following gene: 238920401
Centisome position: 63.23
GC content: 41.19
Gene sequence:
>1248_bases ATGCTTACAACAAAAAATATGCCAGCCAATGCTGGGCTGGCAGCGTTTTCTGCTCAACAGAGAATCGCTTTCATATTAAT CGTGTCCATATCTTTTTTGATGGGAATCAGCATCGACCTTTACGTACCATCGCTTCCCGCCATCTCACACTATTACCACT CCACCATTGCGAGTGTCGAGATCAGTATTAGCCTATACTTGTTAGGTTATGGTCTCGGGCAAACAGTATTGGGTATTTTA TCCGATAGCTATGGCCGAAAAAAAATATTCATTTACTCCTCGCTGTGTTTTTTATTATCCAGTATCTTCTGTGTCCTATC AGACTCTAGCACCATGATGAACGGCTGGCGATTTGTGCAAGGTGTTGCGGTTGCAGGCTTAGCCTCTGGTATGAGGGCCA TTATCGTCGACTTGTTTTCCGGCCTGACACTAAAGAAAATGGCTAACTATTTTGCGTTGAGTTGGGCATTAGGTCCTATC ATCGCCCCCTGGATTGGCTCTAATCTGTCTCACTATTGTGGCTGGCAAGCTAACTTTTATTTATTTGCCGTTTATGGTGG GGTAATATTTCTGATTTGCCTATTTCTTTTCCGAGAATCCAATCACAACCCCAGCAGATTCGAACTTAGCTCTATCAAGA ATAATTTCATTGAGATTATCAGAAACAAGAAATTCACTCTATTAAGTATTATCTATGGCTTAAGTTATAGCTCAGTCTTA GTTTTCAATACTGCTGGACCATATTTAATCGAAGTGGTCATGCACCATAGCGAGTTATTCTATGGCTATCTTGCCATGTT CTTAGGATTAGCATATTTTGTTGGCACAATTATTAATAGGTACCTTATCACAAAATTTGATAACGAAGCCATTCTCAAAG TGGGTGGGACCATGGCTCTCATCGTAGCCATATTGTTATGGCTTCTATTATCTTATGTGCCAAACATTTTTACCCTTATC ATCCCCATATTTTTAATGTTTGTCTGTATTGGGCTTATTGTTCCTAACGCTATTGCCATTACCATGGTTATCTTTCCTGA AAAAGCAGGTTTTGCCACATCGCTGTGTGGTACTATCGTGGGATTGGTCGTTTTTTTAGTGACTTATCTCATCGGCCACG TCAAGATCTCTGCCCTGGAACTATCCCTGTGCTACTTCGCTCTTTTCCTGTTGCTCAATGTCATTAAACTGGCTGTCTAT CATCAGAAAAACAGACCATCACCACCAGAGCATCTTCCCCCTTGCTAA
Upstream 100 bases:
>100_bases TACCGCAGCTCGGTATCGATGGCAAGAGGATTACAGCCAAGCTGGTCTGGCAAAAACAGCCAACCCCATCCCTGTAAGAT CAGACGATAAGGGTTCAGCC
Downstream 100 bases:
>100_bases GCGGCTAGCCATGACAGCACACGACCGCGATGTGAAGCCAAAGGTGCAACATCGCGGCCACGTCTGACGCCTCAATAGCC CCGTAACGCCCGGCACTCCC
Product: drug resistance transporter, Bcr/CflA family
Products: Proton [Cytoplasm]; multidrug [Periplasm] [C]
Alternate protein names: Sulfonamide resistance protein [H]
Number of amino acids: Translated: 415; Mature: 415
Protein sequence:
>415_residues MLTTKNMPANAGLAAFSAQQRIAFILIVSISFLMGISIDLYVPSLPAISHYYHSTIASVEISISLYLLGYGLGQTVLGIL SDSYGRKKIFIYSSLCFLLSSIFCVLSDSSTMMNGWRFVQGVAVAGLASGMRAIIVDLFSGLTLKKMANYFALSWALGPI IAPWIGSNLSHYCGWQANFYLFAVYGGVIFLICLFLFRESNHNPSRFELSSIKNNFIEIIRNKKFTLLSIIYGLSYSSVL VFNTAGPYLIEVVMHHSELFYGYLAMFLGLAYFVGTIINRYLITKFDNEAILKVGGTMALIVAILLWLLLSYVPNIFTLI IPIFLMFVCIGLIVPNAIAITMVIFPEKAGFATSLCGTIVGLVVFLVTYLIGHVKISALELSLCYFALFLLLNVIKLAVY HQKNRPSPPEHLPPC
Sequences:
>Translated_415_residues MLTTKNMPANAGLAAFSAQQRIAFILIVSISFLMGISIDLYVPSLPAISHYYHSTIASVEISISLYLLGYGLGQTVLGIL SDSYGRKKIFIYSSLCFLLSSIFCVLSDSSTMMNGWRFVQGVAVAGLASGMRAIIVDLFSGLTLKKMANYFALSWALGPI IAPWIGSNLSHYCGWQANFYLFAVYGGVIFLICLFLFRESNHNPSRFELSSIKNNFIEIIRNKKFTLLSIIYGLSYSSVL VFNTAGPYLIEVVMHHSELFYGYLAMFLGLAYFVGTIINRYLITKFDNEAILKVGGTMALIVAILLWLLLSYVPNIFTLI IPIFLMFVCIGLIVPNAIAITMVIFPEKAGFATSLCGTIVGLVVFLVTYLIGHVKISALELSLCYFALFLLLNVIKLAVY HQKNRPSPPEHLPPC >Mature_415_residues MLTTKNMPANAGLAAFSAQQRIAFILIVSISFLMGISIDLYVPSLPAISHYYHSTIASVEISISLYLLGYGLGQTVLGIL SDSYGRKKIFIYSSLCFLLSSIFCVLSDSSTMMNGWRFVQGVAVAGLASGMRAIIVDLFSGLTLKKMANYFALSWALGPI IAPWIGSNLSHYCGWQANFYLFAVYGGVIFLICLFLFRESNHNPSRFELSSIKNNFIEIIRNKKFTLLSIIYGLSYSSVL VFNTAGPYLIEVVMHHSELFYGYLAMFLGLAYFVGTIINRYLITKFDNEAILKVGGTMALIVAILLWLLLSYVPNIFTLI IPIFLMFVCIGLIVPNAIAITMVIFPEKAGFATSLCGTIVGLVVFLVTYLIGHVKISALELSLCYFALFLLLNVIKLAVY HQKNRPSPPEHLPPC
Specific function: Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance. Probable membrane translocase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Bcr/CmlA family [H]
Homologues:
Organism=Escherichia coli, GI1788509, Length=351, Percent_Identity=26.2108262108262, Blast_Score=128, Evalue=6e-31, Organism=Escherichia coli, GI48994889, Length=359, Percent_Identity=25.6267409470752, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1790146, Length=323, Percent_Identity=24.4582043343653, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI87082312, Length=333, Percent_Identity=23.7237237237237, Blast_Score=75, Evalue=9e-15, Organism=Escherichia coli, GI1787065, Length=262, Percent_Identity=21.7557251908397, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790794, Length=219, Percent_Identity=25.1141552511416, Blast_Score=67, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004812 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004734 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 45912; Mature: 45912
Theoretical pI: Translated: 8.92; Mature: 8.92
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTTKNMPANAGLAAFSAQQRIAFILIVSISFLMGISIDLYVPSLPAISHYYHSTIASVE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHEE ISISLYLLGYGLGQTVLGILSDSYGRKKIFIYSSLCFLLSSIFCVLSDSSTMMNGWRFVQ EEEEEEEEHHCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GVAVAGLASGMRAIIVDLFSGLTLKKMANYFALSWALGPIIAPWIGSNLSHYCGWQANFY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHH LFAVYGGVIFLICLFLFRESNHNPSRFELSSIKNNFIEIIRNKKFTLLSIIYGLSYSSVL HHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEE VFNTAGPYLIEVVMHHSELFYGYLAMFLGLAYFVGTIINRYLITKFDNEAILKVGGTMAL EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHH IVAILLWLLLSYVPNIFTLIIPIFLMFVCIGLIVPNAIAITMVIFPEKAGFATSLCGTIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHH GLVVFLVTYLIGHVKISALELSLCYFALFLLLNVIKLAVYHQKNRPSPPEHLPPC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MLTTKNMPANAGLAAFSAQQRIAFILIVSISFLMGISIDLYVPSLPAISHYYHSTIASVE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHEE ISISLYLLGYGLGQTVLGILSDSYGRKKIFIYSSLCFLLSSIFCVLSDSSTMMNGWRFVQ EEEEEEEEHHCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GVAVAGLASGMRAIIVDLFSGLTLKKMANYFALSWALGPIIAPWIGSNLSHYCGWQANFY HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHH LFAVYGGVIFLICLFLFRESNHNPSRFELSSIKNNFIEIIRNKKFTLLSIIYGLSYSSVL HHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEE VFNTAGPYLIEVVMHHSELFYGYLAMFLGLAYFVGTIINRYLITKFDNEAILKVGGTMAL EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHH IVAILLWLLLSYVPNIFTLIIPIFLMFVCIGLIVPNAIAITMVIFPEKAGFATSLCGTIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEECCCCCHHHHHHHHHH GLVVFLVTYLIGHVKISALELSLCYFALFLLLNVIKLAVYHQKNRPSPPEHLPPC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; multidrug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + multidrug [Cytoplasm] = Proton [Cytoplasm] + multidrug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8486276; 9278503; 2694948 [H]