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The map label for this gene is rarA [H]

Identifier: 238920372

GI number: 238920372

Start: 2373514

End: 2374857

Strand: Reverse

Name: rarA [H]

Synonym: NT01EI_2482

Alternate gene names: 238920372

Gene position: 2374857-2373514 (Counterclockwise)

Preceding gene: 238920373

Following gene: 238920371

Centisome position: 62.29

GC content: 63.39

Gene sequence:

>1344_bases
GTGAGCAATCTTTCCCTCGACTTCTCCCAGAATGCGTTTCAGCCGTTGGCCGCCCGGATGCGGCCGGCGACGCTGGAGCA
GTACATCGGACAGCGTCACCTGCTGGCGGCGGGCAAACCGCTGCCGCGCGCCATTTTGGCGGGGCACCTGCACTCGATGA
TCCTGTGGGGGCCGCCGGGGACCGGCAAGACGACGCTGGCGGAGCTGATCGCCCGCTACGGCCATGCCGAGGTGGAGCGG
ATTTCGGCGGTGACCTCGGGGATCAAGGAGATCCGTGAGGCCATTGAGCGTGCACGCCACAATCGCGACGCGGGGCGGCG
CACGATCCTGTTCGTCGATGAGGTGCACCGCTTTAACAAGAGTCAGCAGGACGCCTTTTTGCCCCATATCGAGGATGGCA
CCATCACCTTTATCGGGGCCACCACGGAAAACCCCTCGTTTGAGCTGAACTCGGCGTTGTTGTCGCGGGCACGGGTATAC
CTGCTCAAGGCGTTGGATGCGCAGGATATCGTCCAGGTGGTGCGGCAGGCGATGACGGATCGCGAGCGCGGCTATGGCGG
CCAGGATGTGACGCTGCCGACGGAGACCCTGGATGCCCTGGCGGAGCTGGTCAATGGCGATGCGCGTCGGGCGCTGAATA
CGCTGGAGATGATGGCGGATATGGCCGAGACGGACGCCCAGGGGCAGCGGGTGCTAACCCTGGATCTGCTGCGATCGGTG
TCCGGTGAGCGCAGTGCCCGCTTCGATAACCACGGCGATCGCTATTACGACCTGATCTCCGCATTGCATAAGTCCGTGCG
CGGATCCGCACCGGATGCCGCGCTATACTGGTATGCGCGCATTATTACGGCGGGCGGCGATCCGCTGTACGTGGCACGCC
GTCTGCTGGCCATTGCGTCGGAGGATGTGGGCAATGCCGATCCCCGTGCGATGCAGGTGGCGATCGCTGCCTGGGACTGC
TTTACCCGCGTCGGCCCCGCTGAAGGGGAGCGTGCCATTGCCCAGGCGATCGTCTACCTGGCCTGTGCGCCGAAGAGTAA
TGCCGTCTATACCGCCTTTAAGGCGGCGATGCGCGATGCCAAAGAGCGTCCGGACTACGATGTGCCGCCTCACCTGCGCA
ATGCGCCGACGTCTCTGATGAAGTCGATGGGGCTGGGGCAGGAGTACCGCTATGCCCATGATGAACCGAACGGCTATGCG
GCTGGAGAGGTCTATTTCCCACAGGAAATGGCGCAGACGCGCTATTATCAGCCAACGGCGCGCGGCCTTGAGGGTAAGAT
CGGCGATAAGCTGGCCTGGCTCGCTGAGCAGGATCAAAATAGCCCGACAAAACGCTACCGCTAA

Upstream 100 bases:

>100_bases
CAGCAGAATGGCGCGGTGGATGCGGCCAAGTTCCGCTTTACACCGCCGCCTGGTGTGACGCTGGACGATCAGCGTCAACA
ATAAGGGGCGGAACCGCGAC

Downstream 100 bases:

>100_bases
CCCATTCATTGCGGTAAGGTTGTGAAGAAATCCGCTTTGCATTGAGCGCACTGCCGCAGATGTGGCTATCGCCTTGATGT
ATTGTTTATTAAAAACCCCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSNLSLDFSQNAFQPLAARMRPATLEQYIGQRHLLAAGKPLPRAILAGHLHSMILWGPPGTGKTTLAELIARYGHAEVER
ISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKALDAQDIVQVVRQAMTDRERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMAETDAQGQRVLTLDLLRSV
SGERSARFDNHGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDAKERPDYDVPPHLRNAPTSLMKSMGLGQEYRYAHDEPNGYA
AGEVYFPQEMAQTRYYQPTARGLEGKIGDKLAWLAEQDQNSPTKRYR

Sequences:

>Translated_447_residues
MSNLSLDFSQNAFQPLAARMRPATLEQYIGQRHLLAAGKPLPRAILAGHLHSMILWGPPGTGKTTLAELIARYGHAEVER
ISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
LLKALDAQDIVQVVRQAMTDRERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMAETDAQGQRVLTLDLLRSV
SGERSARFDNHGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAIAAWDC
FTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDAKERPDYDVPPHLRNAPTSLMKSMGLGQEYRYAHDEPNGYA
AGEVYFPQEMAQTRYYQPTARGLEGKIGDKLAWLAEQDQNSPTKRYR
>Mature_446_residues
SNLSLDFSQNAFQPLAARMRPATLEQYIGQRHLLAAGKPLPRAILAGHLHSMILWGPPGTGKTTLAELIARYGHAEVERI
SAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
LKALDAQDIVQVVRQAMTDRERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMAETDAQGQRVLTLDLLRSVS
GERSARFDNHGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVAIAAWDCF
TRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDAKERPDYDVPPHLRNAPTSLMKSMGLGQEYRYAHDEPNGYAA
GEVYFPQEMAQTRYYQPTARGLEGKIGDKLAWLAEQDQNSPTKRYR

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=444, Percent_Identity=41.4414414414414, Blast_Score=303, Evalue=2e-82,
Organism=Homo sapiens, GI18426904, Length=444, Percent_Identity=36.9369369369369, Blast_Score=244, Evalue=2e-64,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=86.8008948545861, Blast_Score=802, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6324111, Length=450, Percent_Identity=38.8888888888889, Blast_Score=301, Evalue=2e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=210, Percent_Identity=26.1904761904762, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49517; Mature: 49385

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLSLDFSQNAFQPLAARMRPATLEQYIGQRHLLAAGKPLPRAILAGHLHSMILWGPPG
CCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHEEEECCCC
TGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALDAQDIVQVVRQAMTD
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMAETDAQGQRVLTLDLLRSV
HHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH
SGERSARFDNHGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIAS
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KERPDYDVPPHLRNAPTSLMKSMGLGQEYRYAHDEPNGYAAGEVYFPQEMAQTRYYQPTA
HHCCCCCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCEECCEEECCHHHHHHCCCCCHH
RGLEGKIGDKLAWLAEQDQNSPTKRYR
CCCCCCCCCHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SNLSLDFSQNAFQPLAARMRPATLEQYIGQRHLLAAGKPLPRAILAGHLHSMILWGPPG
CCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHEEEECCCC
TGKTTLAELIARYGHAEVERISAVTSGIKEIREAIERARHNRDAGRRTILFVDEVHRFNK
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCC
SQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKALDAQDIVQVVRQAMTD
CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RERGYGGQDVTLPTETLDALAELVNGDARRALNTLEMMADMAETDAQGQRVLTLDLLRSV
HHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH
SGERSARFDNHGDRYYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRLLAIAS
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMRDA
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KERPDYDVPPHLRNAPTSLMKSMGLGQEYRYAHDEPNGYAAGEVYFPQEMAQTRYYQPTA
HHCCCCCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCEECCEEECCHHHHHHCCCCCHH
RGLEGKIGDKLAWLAEQDQNSPTKRYR
CCCCCCCCCHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]