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The map label for this gene is ycaR [C]

Identifier: 238920338

GI number: 238920338

Start: 2338965

End: 2339141

Strand: Reverse

Name: ycaR [C]

Synonym: NT01EI_2448

Alternate gene names: 238920338

Gene position: 2339141-2338965 (Counterclockwise)

Preceding gene: 238920339

Following gene: 238920337

Centisome position: 61.36

GC content: 53.67

Gene sequence:

>177_bases
ATGGATCACCGTTTACTCGAGATAATTGCCTGCCCGGTATGTAACGGAAAGCTCTCCTTTAACCAGGAGCATCAGGAGCT
CGTCTGTAAAATTGACCGTTTGGCCTTTCCGCTGCGTGACGGCATCCCCGTGATGCTGGAAAGCGAGGCCCGACCCTTGC
CGCAGGAAGAGAATTGA

Upstream 100 bases:

>100_bases
CATTCTGCACACCCGGGCTGTGCCCGCGGATGATTAATTCCCCTGAAGGGGGTATGCTAGCACTACTTTTGGATAGCAAA
ATCAGTAGGACCCTTTACGC

Downstream 100 bases:

>100_bases
TGAGTTTTATTGCTATTATCCCATCCCGATATGCATCGACCCGTCTGCCGGGGAAGCCGCTGGCGGACATCGCCGGTAAA
CCCATGGTGGTACATGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 58; Mature: 58

Protein sequence:

>58_residues
MDHRLLEIIACPVCNGKLSFNQEHQELVCKIDRLAFPLRDGIPVMLESEARPLPQEEN

Sequences:

>Translated_58_residues
MDHRLLEIIACPVCNGKLSFNQEHQELVCKIDRLAFPLRDGIPVMLESEARPLPQEEN
>Mature_58_residues
MDHRLLEIIACPVCNGKLSFNQEHQELVCKIDRLAFPLRDGIPVMLESEARPLPQEEN

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family

Homologues:

Organism=Escherichia coli, GI1787146, Length=58, Percent_Identity=77.5862068965517, Blast_Score=99, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2448_EDWI9 (C5BAD8)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933853.1
- ProteinModelPortal:   C5BAD8
- GeneID:   7959180
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2448
- OMA:   NELVSEK
- ProtClustDB:   CLSK2813318
- HAMAP:   MF_01187
- InterPro:   IPR005651

Pfam domain/function: PF03966 Trm112p

EC number: NA

Molecular weight: Translated: 6658; Mature: 6658

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHRLLEIIACPVCNGKLSFNQEHQELVCKIDRLAFPLRDGIPVMLESEARPLPQEEN
CCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MDHRLLEIIACPVCNGKLSFNQEHQELVCKIDRLAFPLRDGIPVMLESEARPLPQEEN
CCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA