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The map label for this gene is yciT [H]

Identifier: 238920229

GI number: 238920229

Start: 2238025

End: 2238621

Strand: Direct

Name: yciT [H]

Synonym: NT01EI_2338

Alternate gene names: 238920229

Gene position: 2238025-2238621 (Clockwise)

Preceding gene: 238920223

Following gene: 238920230

Centisome position: 58.71

GC content: 60.47

Gene sequence:

>597_bases
TTGGAAAAGCGCAGCTACCTCAGGCGGGTGCATGGTTTTACCGTCGCCCTGGAGAGCGGGGAACTCGACACCCGCATGAT
GATTAACTTCACCCTGAAGCAGTCGCTGGCCGCCGATACGGCCTCCCTGCTCAGTGACGGAGAGACCATTTTTATCGAAA
GCGGCAGCACCAACGCCCTGCTGGCGCGCTATCTGGCCGAGCGTAAACAGGTCACGCGGGTCACCGTCAGCACCTATATC
GCCCATCTGCTGAAAGAGACCGGCTGCGATGTGATCCTGATGGGCGGTCTGCATCAGAAGCGCCGCGAAACCGTAGTCGG
CCCACTGACCCACCTGGGTATCCAGCAGGTCTACTTCAGCAAGGCCTCCATCGGCATCGACGGCTTTCATCCCGAGAGCG
GCTTTACCGGGTGCGACATGATGTGCAGCGCCGTGCTGGCCAAAGGCGTGGAGAACATCATCCTGACCGACGCGTCAAAA
TTTGGCCAGCCCCCATCCACTGCTGTCCACCGGCACCATCAGCCGGGTGATCACCGACTGCCGCTTAAGCGATGCACAAC
GTGGCTCGTTGAAGGGACGGGGCATCGCGGTCGATAA

Upstream 100 bases:

>100_bases
ATGAACGCCAGACTTCTGCAATGGGTCAACGATCAGCATCGCTGACCTGGCCCGCACCTTCCGGGTTTCCGAAGTCACCA
TTCGTCAGGATCTGACGCTG

Downstream 100 bases:

>100_bases
GATCGCTGAAAACGGTATCCGCTGATCCTGCCACGCAGAAAAATCCCGGGCGCCCCTTGCAACCCTGGGACAATAGCTGT
ATATATTTACAGTAAATCAC

Product: transcriptional regulator, DeoR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MEKRSYLRRVHGFTVALESGELDTRMMINFTLKQSLAADTASLLSDGETIFIESGSTNALLARYLAERKQVTRVTVSTYI
AHLLKETGCDVILMGGLHQKRRETVVGPLTHLGIQQVYFSKASIGIDGFHPESGFTGCDMMCSAVLAKGVENIILTDASK
FGQPPSTAVHRHHQPGDHRLPLKRCTTWLVEGTGHRGR

Sequences:

>Translated_198_residues
MEKRSYLRRVHGFTVALESGELDTRMMINFTLKQSLAADTASLLSDGETIFIESGSTNALLARYLAERKQVTRVTVSTYI
AHLLKETGCDVILMGGLHQKRRETVVGPLTHLGIQQVYFSKASIGIDGFHPESGFTGCDMMCSAVLAKGVENIILTDASK
FGQPPSTAVHRHHQPGDHRLPLKRCTTWLVEGTGHRGR
>Mature_198_residues
MEKRSYLRRVHGFTVALESGELDTRMMINFTLKQSLAADTASLLSDGETIFIESGSTNALLARYLAERKQVTRVTVSTYI
AHLLKETGCDVILMGGLHQKRRETVVGPLTHLGIQQVYFSKASIGIDGFHPESGFTGCDMMCSAVLAKGVENIILTDASK
FGQPPSTAVHRHHQPGDHRLPLKRCTTWLVEGTGHRGR

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=177, Percent_Identity=61.0169491525424, Blast_Score=207, Evalue=3e-55,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 21805; Mature: 21805

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRSYLRRVHGFTVALESGELDTRMMINFTLKQSLAADTASLLSDGETIFIESGSTNAL
CCHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
LARYLAERKQVTRVTVSTYIAHLLKETGCDVILMGGLHQKRRETVVGPLTHLGIQQVYFS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
KASIGIDGFHPESGFTGCDMMCSAVLAKGVENIILTDASKFGQPPSTAVHRHHQPGDHRL
HHHCCCCCCCCCCCCCHHHHHHHHHHHHCHHHEEEECHHHHCCCCCHHHHCCCCCCCCCC
PLKRCTTWLVEGTGHRGR
CHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEKRSYLRRVHGFTVALESGELDTRMMINFTLKQSLAADTASLLSDGETIFIESGSTNAL
CCHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
LARYLAERKQVTRVTVSTYIAHLLKETGCDVILMGGLHQKRRETVVGPLTHLGIQQVYFS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
KASIGIDGFHPESGFTGCDMMCSAVLAKGVENIILTDASKFGQPPSTAVHRHHQPGDHRL
HHHCCCCCCCCCCCCCHHHHHHHHHHHHCHHHEEEECHHHHCCCCCHHHHCCCCCCCCCC
PLKRCTTWLVEGTGHRGR
CHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]