Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

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The map label for this gene is 238920150

Identifier: 238920150

GI number: 238920150

Start: 2165496

End: 2166395

Strand: Direct

Name: 238920150

Synonym: NT01EI_2256

Alternate gene names: NA

Gene position: 2165496-2166395 (Clockwise)

Preceding gene: 238920146

Following gene: 238920151

Centisome position: 56.8

GC content: 58.89

Gene sequence:

>900_bases
ATGGCGCGCTTAAAAACAGACTGGATAGCCATCGCGACCGCCGGACCCACCATTGACGGCCGCCAGATTGAGGCGCAATG
GCTCACCGACGCCGCCAAATGCTATAACCGGGATGAGTATACCGCCATGATCTGGCCCTATCACGAAAGCCCCTATTGGC
GCGCATTCGGCACCAACTTTGGCGAAGTCGACGAGTTAAAGACCGAAACGCGCGACGGTAAAATACAGTTAATGGCCCGC
CTCATTCCCAATCAGTTTCTCATTGAGGCCAACAGGAGCGGGCAGAAACTGTTTACCTCTGTCGAGATCGTCGAGGACTA
CCTCGGCAGCGGGAAATACTTTCTCAAAGGGCTGGCGGTGACCGATACACCGGCCAGCATCGGCACCACCCGCCTGCAGT
TCAGCCAGGACAATCCCGGCGCCCATCACGGCAACGTGGAAGCGCTGATCCTGACGCTGCCGGGTGACGACGCGGACAGT
GCTGCTGAACAACAGGCCAGGCGGGGATTCTTTTCCCGCCTGTTCTCCCAGGAAACACCCGCCCCCAACGAAACAGCAAA
GGCGACCCCTATGGACGAGAAGCAATTTAACCAGGTGATGGACGCCATCAACCTCATCGGTACGCGTGTTGAGACGATGG
AGAAATCCTTCGCTGATGCCAGTCCCTCCGCAGCCACGGCGCCCACGCCGCCGCAAGGCGCCACATCCGACCCGGCAGGT
AATGATGGGGGCGAGGGTCACTTTGCGAGCCAGGAACAGCTCGAGCAACTGGCGACGGCTATCGAGAGCCTGTCTAAAAA
GATGGATGACATCAGCCAGACCTTCGCCGACCTGCAGGGCGATAACACCCCACTGCCGAACGGAAACCCGTCCGGTGACG
AATCCATCAATCTGGTCTGA

Upstream 100 bases:

>100_bases
CCCCGCCATAGCCGAAACTATCCGTAACGGCCTGCATGACACCCGCGATTTTCACCGGTTAAATTTGGCTACTCCTCTTT
AATCAGGTCGGTATCTTGAT

Downstream 100 bases:

>100_bases
GGCAAATAAACACCATGAGTATGATCACCCCCGAAGCCCAGAAGCTGACGCAGCTGTTCATCGCGAAATTCTCCGATACG
TTTAACGACTGCGGGCGCTC

Product: phage capsid scaffolding

Products: NA

Alternate protein names: Capsid Scaffolding; Phage Capsid Scaffolding; Capsid Scaffolding Protein; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Scaffold Protein; Presumed Capsid-Scaffolding Protein; Capsid Scaffolding Protein Bacteriophage Origin; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNFGEVDELKTETRDGKIQLMAR
LIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAVTDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADS
AAEQQARRGFFSRLFSQETPAPNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG
NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV

Sequences:

>Translated_299_residues
MARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNFGEVDELKTETRDGKIQLMAR
LIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAVTDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADS
AAEQQARRGFFSRLFSQETPAPNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG
NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV
>Mature_298_residues
ARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNFGEVDELKTETRDGKIQLMARL
IPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAVTDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADSA
AEQQARRGFFSRLFSQETPAPNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAGN
DGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32537; Mature: 32406

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNF
CCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCC
GEVDELKTETRDGKIQLMARLIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAV
CCHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
TDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADSAAEQQARRGFFSRLFSQETP
ECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
APNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure 
ARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNF
CCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCC
GEVDELKTETRDGKIQLMARLIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAV
CCHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
TDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADSAAEQQARRGFFSRLFSQETP
ECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC
APNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA