| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920150
Identifier: 238920150
GI number: 238920150
Start: 2165496
End: 2166395
Strand: Direct
Name: 238920150
Synonym: NT01EI_2256
Alternate gene names: NA
Gene position: 2165496-2166395 (Clockwise)
Preceding gene: 238920146
Following gene: 238920151
Centisome position: 56.8
GC content: 58.89
Gene sequence:
>900_bases ATGGCGCGCTTAAAAACAGACTGGATAGCCATCGCGACCGCCGGACCCACCATTGACGGCCGCCAGATTGAGGCGCAATG GCTCACCGACGCCGCCAAATGCTATAACCGGGATGAGTATACCGCCATGATCTGGCCCTATCACGAAAGCCCCTATTGGC GCGCATTCGGCACCAACTTTGGCGAAGTCGACGAGTTAAAGACCGAAACGCGCGACGGTAAAATACAGTTAATGGCCCGC CTCATTCCCAATCAGTTTCTCATTGAGGCCAACAGGAGCGGGCAGAAACTGTTTACCTCTGTCGAGATCGTCGAGGACTA CCTCGGCAGCGGGAAATACTTTCTCAAAGGGCTGGCGGTGACCGATACACCGGCCAGCATCGGCACCACCCGCCTGCAGT TCAGCCAGGACAATCCCGGCGCCCATCACGGCAACGTGGAAGCGCTGATCCTGACGCTGCCGGGTGACGACGCGGACAGT GCTGCTGAACAACAGGCCAGGCGGGGATTCTTTTCCCGCCTGTTCTCCCAGGAAACACCCGCCCCCAACGAAACAGCAAA GGCGACCCCTATGGACGAGAAGCAATTTAACCAGGTGATGGACGCCATCAACCTCATCGGTACGCGTGTTGAGACGATGG AGAAATCCTTCGCTGATGCCAGTCCCTCCGCAGCCACGGCGCCCACGCCGCCGCAAGGCGCCACATCCGACCCGGCAGGT AATGATGGGGGCGAGGGTCACTTTGCGAGCCAGGAACAGCTCGAGCAACTGGCGACGGCTATCGAGAGCCTGTCTAAAAA GATGGATGACATCAGCCAGACCTTCGCCGACCTGCAGGGCGATAACACCCCACTGCCGAACGGAAACCCGTCCGGTGACG AATCCATCAATCTGGTCTGA
Upstream 100 bases:
>100_bases CCCCGCCATAGCCGAAACTATCCGTAACGGCCTGCATGACACCCGCGATTTTCACCGGTTAAATTTGGCTACTCCTCTTT AATCAGGTCGGTATCTTGAT
Downstream 100 bases:
>100_bases GGCAAATAAACACCATGAGTATGATCACCCCCGAAGCCCAGAAGCTGACGCAGCTGTTCATCGCGAAATTCTCCGATACG TTTAACGACTGCGGGCGCTC
Product: phage capsid scaffolding
Products: NA
Alternate protein names: Capsid Scaffolding; Phage Capsid Scaffolding; Capsid Scaffolding Protein; Capsid Scaffolding Protein O; Phage Capsid Scaffolding Protein GpO; Phage-Related Capsid Scaffolding Protein; V Protein Bacteriophage; Scaffold Protein; Presumed Capsid-Scaffolding Protein; Capsid Scaffolding Protein Bacteriophage Origin; Bacteriophage Protein; Bacteriophage P2 GPO Capsid Protein; Scaffold; Capsid Protein; Presumed Capsid Scaffolding Protein; Capsid Scafolding Protein; Phage-Related Capsid Scaffold Protein; Phage-Related Capsid Scaffold Bacteriophage Protein; Phage P2 Capsid Scaffolding GpO-Like Protein; Prophage Capsid Scaffolding Protein; Flagellar Biosynthesis/Type III Secretory Pathway Protein
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNFGEVDELKTETRDGKIQLMAR LIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAVTDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADS AAEQQARRGFFSRLFSQETPAPNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV
Sequences:
>Translated_299_residues MARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNFGEVDELKTETRDGKIQLMAR LIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAVTDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADS AAEQQARRGFFSRLFSQETPAPNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV >Mature_298_residues ARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNFGEVDELKTETRDGKIQLMARL IPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAVTDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADSA AEQQARRGFFSRLFSQETPAPNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAGN DGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32537; Mature: 32406
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNF CCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCC GEVDELKTETRDGKIQLMARLIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAV CCHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE TDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADSAAEQQARRGFFSRLFSQETP ECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC APNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC >Mature Secondary Structure ARLKTDWIAIATAGPTIDGRQIEAQWLTDAAKCYNRDEYTAMIWPYHESPYWRAFGTNF CCCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHCCCC GEVDELKTETRDGKIQLMARLIPNQFLIEANRSGQKLFTSVEIVEDYLGSGKYFLKGLAV CCHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE TDTPASIGTTRLQFSQDNPGAHHGNVEALILTLPGDDADSAAEQQARRGFFSRLFSQETP ECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC APNETAKATPMDEKQFNQVMDAINLIGTRVETMEKSFADASPSAATAPTPPQGATSDPAG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC NDGGEGHFASQEQLEQLATAIESLSKKMDDISQTFADLQGDNTPLPNGNPSGDESINLV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA