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The map label for this gene is dcuD [H]

Identifier: 238920043

GI number: 238920043

Start: 2077316

End: 2078143

Strand: Direct

Name: dcuD [H]

Synonym: NT01EI_2147

Alternate gene names: 238920043

Gene position: 2077316-2078143 (Clockwise)

Preceding gene: 238920042

Following gene: 238920044

Centisome position: 54.49

GC content: 46.38

Gene sequence:

>828_bases
ATGGCAGCTAAAACGGCTAATCTGGATCCAGCGACATACTTTATAAAATATCAATTACCCGTGACCCTTCCTATCATCTT
TGTTGTGGCCATTACTCACTTTTTTATCCAGAAATGGTGGGATAAGCGTGAGGGTTTTGTATTCAACCCAGCACATATTG
ATAAGTTCGATCACCAGGATAACGACTGCCCACCACGTTATTATGCCATATTGCCGATCATTCCGTTGATCCTGATTATA
GGTTTCAGCCCATTAATACAGAAGGTGATCAAATTAGACGTTACTACCGCAATGATTATCAGCACCACTATCGCACTGTT
CTTTGAATATGTTCGCTTACGTAGTGCTAAGGCCGTACTTGATAGCTTCATGCTCTTCTTTGAGGGGATGGGTAAACAAT
TTGTGGTAGTGGTATCGCTGATCGTTTCCGGCGAGTTATTTGCCAACGGTCTGCTCAAAATAGGTGCCGTAGATAAACTG
ATTACTACAGCGCAAAGCGCTGGCATAGGCATTGGAACCATGATCGTTGTCATGAGTTTTATCCTGGCGCTGGCAGCCTT
CCTGATGGGGTCAGGAAACGCGGCATTTTTCTCATTCGCGGCACTCACGCCAAGAATCGCGGCTTTCTTGAAGATCGATG
TGGTGACCCTCATTTTGCCAATGCAGATTATGACCAGTTTTGGTCGAACGGTATCCCCCATTACAGCAGCAATCGTTGCC
ATCTCTGGCATCGCGGGCGTATCGCCATTCCAGGTAGCTAAACGCACGGCGATCCCTATGGCTGCCGCAGCAATAACCAA
CCTGGCATTGACCTTTATCTACCTATGA

Upstream 100 bases:

>100_bases
ATCCAATCCTGATCCGTGCAGGGGTCAGTCCACTCTCCGCGCTGGCCGTCATCGGTTGTTGCCAGTTTATTGATCATGGC
CGGGCTCTGGTAACGTCATC

Downstream 100 bases:

>100_bases
TAATTTGAGGGACGATGGATTTGATAGCAGCATGTTCAGAAGGGTAACTCTCCCACTGCTCTATCAACATTCTGACTGCT
GGTTCACAGAGTTCGGGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MAAKTANLDPATYFIKYQLPVTLPIIFVVAITHFFIQKWWDKREGFVFNPAHIDKFDHQDNDCPPRYYAILPIIPLILII
GFSPLIQKVIKLDVTTAMIISTTIALFFEYVRLRSAKAVLDSFMLFFEGMGKQFVVVVSLIVSGELFANGLLKIGAVDKL
ITTAQSAGIGIGTMIVVMSFILALAAFLMGSGNAAFFSFAALTPRIAAFLKIDVVTLILPMQIMTSFGRTVSPITAAIVA
ISGIAGVSPFQVAKRTAIPMAAAAITNLALTFIYL

Sequences:

>Translated_275_residues
MAAKTANLDPATYFIKYQLPVTLPIIFVVAITHFFIQKWWDKREGFVFNPAHIDKFDHQDNDCPPRYYAILPIIPLILII
GFSPLIQKVIKLDVTTAMIISTTIALFFEYVRLRSAKAVLDSFMLFFEGMGKQFVVVVSLIVSGELFANGLLKIGAVDKL
ITTAQSAGIGIGTMIVVMSFILALAAFLMGSGNAAFFSFAALTPRIAAFLKIDVVTLILPMQIMTSFGRTVSPITAAIVA
ISGIAGVSPFQVAKRTAIPMAAAAITNLALTFIYL
>Mature_274_residues
AAKTANLDPATYFIKYQLPVTLPIIFVVAITHFFIQKWWDKREGFVFNPAHIDKFDHQDNDCPPRYYAILPIIPLILIIG
FSPLIQKVIKLDVTTAMIISTTIALFFEYVRLRSAKAVLDSFMLFFEGMGKQFVVVVSLIVSGELFANGLLKIGAVDKLI
TTAQSAGIGIGTMIVVMSFILALAAFLMGSGNAAFFSFAALTPRIAAFLKIDVVTLILPMQIMTSFGRTVSPITAAIVAI
SGIAGVSPFQVAKRTAIPMAAAAITNLALTFIYL

Specific function: May have a role in the transport of dicarboxylates from the periplasm across the inner membrane. Seems not to be essential for growth. It is likely to be a cryptic gene, as no or low expression has been found under a number of growth conditions and when t

COG id: COG3069

COG function: function code C; C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuC/dcuD transporter (TC 2.A.61) family [H]

Homologues:

Organism=Escherichia coli, GI1789622, Length=276, Percent_Identity=46.3768115942029, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1786839, Length=262, Percent_Identity=33.206106870229, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018385
- InterPro:   IPR004669 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 29905; Mature: 29774

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKTANLDPATYFIKYQLPVTLPIIFVVAITHFFIQKWWDKREGFVFNPAHIDKFDHQD
CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC
NDCPPRYYAILPIIPLILIIGFSPLIQKVIKLDVTTAMIISTTIALFFEYVRLRSAKAVL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSFMLFFEGMGKQFVVVVSLIVSGELFANGLLKIGAVDKLITTAQSAGIGIGTMIVVMSF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ILALAAFLMGSGNAAFFSFAALTPRIAAFLKIDVVTLILPMQIMTSFGRTVSPITAAIVA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ISGIAGVSPFQVAKRTAIPMAAAAITNLALTFIYL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAKTANLDPATYFIKYQLPVTLPIIFVVAITHFFIQKWWDKREGFVFNPAHIDKFDHQD
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHCCCCCCCC
NDCPPRYYAILPIIPLILIIGFSPLIQKVIKLDVTTAMIISTTIALFFEYVRLRSAKAVL
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSFMLFFEGMGKQFVVVVSLIVSGELFANGLLKIGAVDKLITTAQSAGIGIGTMIVVMSF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
ILALAAFLMGSGNAAFFSFAALTPRIAAFLKIDVVTLILPMQIMTSFGRTVSPITAAIVA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ISGIAGVSPFQVAKRTAIPMAAAAITNLALTFIYL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]