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The map label for this gene is dcuD [H]

Identifier: 238920042

GI number: 238920042

Start: 2077020

End: 2077361

Strand: Direct

Name: dcuD [H]

Synonym: NT01EI_2146

Alternate gene names: 238920042

Gene position: 2077020-2077361 (Clockwise)

Preceding gene: 238920041

Following gene: 238920043

Centisome position: 54.48

GC content: 47.66

Gene sequence:

>342_bases
ATGGCGATAGCGGGTTTTGCCCGCTATATGGAGCACGTGGGTGCGAGTAAAGCGTTATTCTCAACTTTTGAAAAACCGCT
AAAATCGGTACGCTCACCTTATATGCTGTTAGTTATTTCATTCCTGGTAACCCAGATCTTGGTGATCTTTATCCCAAGCC
ATGCAGGATTGGGTATGCTGTTAATGGTGACAATGTATCCAATCCTGATCCGTGCAGGGGTCAGTCCACTCTCCGCGCTG
GCCGTCATCGGTTGTTGCCAGTTTATTGATCATGGCCGGGCTCTGGTAACGTCATCATGGCAGCTAAAACGGCTAATCTG
GATCCAGCGACATACTTTATAA

Upstream 100 bases:

>100_bases
ATTGCCCGCAGAGAAAACCACTCATTTAAAGTATTTTGATATCTTTAAGATATTTTCTGACATTCTTAGCCTAAGATTAG
CAGGACTTGGCTTAACATTG

Downstream 100 bases:

>100_bases
AATATCAATTACCCGTGACCCTTCCTATCATCTTTGTTGTGGCCATTACTCACTTTTTTATCCAGAAATGGTGGGATAAG
CGTGAGGGTTTTGTATTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MAIAGFARYMEHVGASKALFSTFEKPLKSVRSPYMLLVISFLVTQILVIFIPSHAGLGMLLMVTMYPILIRAGVSPLSAL
AVIGCCQFIDHGRALVTSSWQLKRLIWIQRHTL

Sequences:

>Translated_113_residues
MAIAGFARYMEHVGASKALFSTFEKPLKSVRSPYMLLVISFLVTQILVIFIPSHAGLGMLLMVTMYPILIRAGVSPLSAL
AVIGCCQFIDHGRALVTSSWQLKRLIWIQRHTL
>Mature_112_residues
AIAGFARYMEHVGASKALFSTFEKPLKSVRSPYMLLVISFLVTQILVIFIPSHAGLGMLLMVTMYPILIRAGVSPLSALA
VIGCCQFIDHGRALVTSSWQLKRLIWIQRHTL

Specific function: May have a role in the transport of dicarboxylates from the periplasm across the inner membrane. Seems not to be essential for growth. It is likely to be a cryptic gene, as no or low expression has been found under a number of growth conditions and when t

COG id: COG3069

COG function: function code C; C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuC/dcuD transporter (TC 2.A.61) family [H]

Homologues:

Organism=Escherichia coli, GI1789622, Length=92, Percent_Identity=52.1739130434783, Blast_Score=99, Evalue=8e-23,
Organism=Escherichia coli, GI1786839, Length=75, Percent_Identity=37.3333333333333, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018385
- InterPro:   IPR004669 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 12560; Mature: 12429

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIAGFARYMEHVGASKALFSTFEKPLKSVRSPYMLLVISFLVTQILVIFIPSHAGLGML
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LMVTMYPILIRAGVSPLSALAVIGCCQFIDHGRALVTSSWQLKRLIWIQRHTL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AIAGFARYMEHVGASKALFSTFEKPLKSVRSPYMLLVISFLVTQILVIFIPSHAGLGML
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LMVTMYPILIRAGVSPLSALAVIGCCQFIDHGRALVTSSWQLKRLIWIQRHTL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]