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The map label for this gene is ydgA [H]

Identifier: 238919976

GI number: 238919976

Start: 2000380

End: 2001858

Strand: Direct

Name: ydgA [H]

Synonym: NT01EI_2080

Alternate gene names: 238919976

Gene position: 2000380-2001858 (Clockwise)

Preceding gene: 238919975

Following gene: 238919977

Centisome position: 52.47

GC content: 59.23

Gene sequence:

>1479_bases
ATGAAAAAATCAGCCGTCGCCGTTGCGGTCATCGTGGTATTGGGCGCAGCCTGGAGCGGCGCATCGTGGTATACCGGTAA
GCTTATTGAGCAGCGTATGGACGGTGAGGTTGCCCGTCTTAACGAAAGCCTCACTCAGCGTCTGCCTCAGGCCGGCCTGA
AGATCAGCTACCAGGATTACCAGCGCGGCGTTTTCTCCAGCCGGGTTCACTACATTATCCAGGCTGATCCCGCCGCCAAA
CAGGATGCACTGCTGAAGCCGGGTCAGCAGCTGGCGCTGAATGAAACCATCAGCCATGGCCCCTTCCCGCTGGCCCGCTT
CTCACTGGTTCCCAGCATGGCCGTAGTGTACAGTGAGCTGGCCAATACGCCGCTGGTCGCCCCGCTGTTTACAGCCAATA
AAGGAACGTCGCCCCTTGATGCCTATACCCGAATCGCCTATAGCGGGGATAACAGCACCGAGATAACCCTGCAGCCACTC
TCTCTGCAAACAGGCGAGAATAAAATCGACTTTGGCGGCGCGCAGATTAAGGCCGATATCGCCCGCGATCTCAGCCGAAT
GGATCTTACGGCAGATGCCAGAAGCCTGAGCATCGATGCCCCAAACGGGGGTCAGCGTGAAACCCTGTCGCTGACAGGCG
CCACCTTTACCACTCACAGCAAGATGGGCAAGTTTGGCCTGAATATCGGTGAACAGCAGATCGCCGCCAAGCGCCTGAGC
CTGTCGTTCGATGGCAAAGAGAGCGCCGCGCTGGACGATCTGGCAATGGATGCCAGTCTGAAAGAGGGTGAACGTACGCT
GGATGCGCGGGTGGACTATCGTCTCGGCGGTCTGCAGATCGATGGGAAAGCCTTCGGTAGCGGCGCCATGACGCTGAATC
TGAATGGGTTTGATGGCCATGGCGTGAAAAAGTTTGCTGATGAATACGATGCCTTTATCCGCCGCCAGATGAACAGCGGC
AACAGCAGCAACAGCGTCGCCTATCAGCAGCAGCTAGCCGGCATGCTGGATGCCGCCCTGCCCAGCCTGCTGAGCGGCAA
TCCTCAGATCGATCTCAAGCCGGTCACCTGGAAAAACAGCGCCGGCAGCAGTCAGTTTGACCTTAGCCTATCATTGAGCG
CACCGGCCAAGACCGAGGCCGCCGCCGCGCTGCCGCCGCTGTTGCAGGCCGTCCGTACGCTGGATGTCTCCCTTAACCTC
TCCATGCCGATGGCGACACAAATCGCCGCCAATGCGGCCGAGCTGGAGGGATACCAAACCGATGAGGCGCAAAAGCTGGC
GGCACAGCAGGTGCAGGGCGTTTCCGCCATGGGTCAGATGTTTAAGCTCACGACGCAGCAGGATAATGCGATCGTCAGCC
AGCTGCACTATGCCAACGGGCAGGTAACCCTGAACGGCAAGCAGATGACCCTGGCCCAGTTTGCCGGCCTGTTTGGCGTG
CTTGGCGGTATGGATTCGGCGCCCGTCGGCGCACAGTAA

Upstream 100 bases:

>100_bases
CCCTTGCCCCCACAATAAAAACGCCTGCGGGCGTTTTTTTACCTTCCGGCACCGATGCGCTTGAAACCGGTGCCCGATTC
TGGCTACAGAAGGACAGAGT

Downstream 100 bases:

>100_bases
TCCCCCCGAAGCTATCGATAATGCCCGCCACCCGGTGGGCATTTTTCATTCCCGCTCCTGCATCACAGCAGTGCTGTATA
TAAATACAGTACTACCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MKKSAVAVAVIVVLGAAWSGASWYTGKLIEQRMDGEVARLNESLTQRLPQAGLKISYQDYQRGVFSSRVHYIIQADPAAK
QDALLKPGQQLALNETISHGPFPLARFSLVPSMAVVYSELANTPLVAPLFTANKGTSPLDAYTRIAYSGDNSTEITLQPL
SLQTGENKIDFGGAQIKADIARDLSRMDLTADARSLSIDAPNGGQRETLSLTGATFTTHSKMGKFGLNIGEQQIAAKRLS
LSFDGKESAALDDLAMDASLKEGERTLDARVDYRLGGLQIDGKAFGSGAMTLNLNGFDGHGVKKFADEYDAFIRRQMNSG
NSSNSVAYQQQLAGMLDAALPSLLSGNPQIDLKPVTWKNSAGSSQFDLSLSLSAPAKTEAAAALPPLLQAVRTLDVSLNL
SMPMATQIAANAAELEGYQTDEAQKLAAQQVQGVSAMGQMFKLTTQQDNAIVSQLHYANGQVTLNGKQMTLAQFAGLFGV
LGGMDSAPVGAQ

Sequences:

>Translated_492_residues
MKKSAVAVAVIVVLGAAWSGASWYTGKLIEQRMDGEVARLNESLTQRLPQAGLKISYQDYQRGVFSSRVHYIIQADPAAK
QDALLKPGQQLALNETISHGPFPLARFSLVPSMAVVYSELANTPLVAPLFTANKGTSPLDAYTRIAYSGDNSTEITLQPL
SLQTGENKIDFGGAQIKADIARDLSRMDLTADARSLSIDAPNGGQRETLSLTGATFTTHSKMGKFGLNIGEQQIAAKRLS
LSFDGKESAALDDLAMDASLKEGERTLDARVDYRLGGLQIDGKAFGSGAMTLNLNGFDGHGVKKFADEYDAFIRRQMNSG
NSSNSVAYQQQLAGMLDAALPSLLSGNPQIDLKPVTWKNSAGSSQFDLSLSLSAPAKTEAAAALPPLLQAVRTLDVSLNL
SMPMATQIAANAAELEGYQTDEAQKLAAQQVQGVSAMGQMFKLTTQQDNAIVSQLHYANGQVTLNGKQMTLAQFAGLFGV
LGGMDSAPVGAQ
>Mature_492_residues
MKKSAVAVAVIVVLGAAWSGASWYTGKLIEQRMDGEVARLNESLTQRLPQAGLKISYQDYQRGVFSSRVHYIIQADPAAK
QDALLKPGQQLALNETISHGPFPLARFSLVPSMAVVYSELANTPLVAPLFTANKGTSPLDAYTRIAYSGDNSTEITLQPL
SLQTGENKIDFGGAQIKADIARDLSRMDLTADARSLSIDAPNGGQRETLSLTGATFTTHSKMGKFGLNIGEQQIAAKRLS
LSFDGKESAALDDLAMDASLKEGERTLDARVDYRLGGLQIDGKAFGSGAMTLNLNGFDGHGVKKFADEYDAFIRRQMNSG
NSSNSVAYQQQLAGMLDAALPSLLSGNPQIDLKPVTWKNSAGSSQFDLSLSLSAPAKTEAAAALPPLLQAVRTLDVSLNL
SMPMATQIAANAAELEGYQTDEAQKLAAQQVQGVSAMGQMFKLTTQQDNAIVSQLHYANGQVTLNGKQMTLAQFAGLFGV
LGGMDSAPVGAQ

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=492, Percent_Identity=39.2276422764228, Blast_Score=367, Evalue=1e-103,
Organism=Escherichia coli, GI87082339, Length=488, Percent_Identity=26.844262295082, Blast_Score=187, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 52257; Mature: 52257

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSAVAVAVIVVLGAAWSGASWYTGKLIEQRMDGEVARLNESLTQRLPQAGLKISYQDY
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCEEEHHHH
QRGVFSSRVHYIIQADPAAKQDALLKPGQQLALNETISHGPFPLARFSLVPSMAVVYSEL
HCCHHHCCEEEEEECCCCCCCCHHCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ANTPLVAPLFTANKGTSPLDAYTRIAYSGDNSTEITLQPLSLQTGENKIDFGGAQIKADI
CCCCCEEEEEECCCCCCCHHHHHEEEECCCCCCEEEEEEEEECCCCCEECCCCCEEHHHH
ARDLSRMDLTADARSLSIDAPNGGQRETLSLTGATFTTHSKMGKFGLNIGEQQIAAKRLS
HHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCEEEEHHHCCCCCCCCCHHHHHHHHHE
LSFDGKESAALDDLAMDASLKEGERTLDARVDYRLGGLQIDGKAFGSGAMTLNLNGFDGH
EEECCCCCHHHHHHHHCCCHHCCCHHHHHEEEEEECCEEECCCCCCCCEEEEEECCCCCC
GVKKFADEYDAFIRRQMNSGNSSNSVAYQQQLAGMLDAALPSLLSGNPQIDLKPVTWKNS
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
AGSSQFDLSLSLSAPAKTEAAAALPPLLQAVRTLDVSLNLSMPMATQIAANAAELEGYQT
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHCCHHHCCCCCC
DEAQKLAAQQVQGVSAMGQMFKLTTQQDNAIVSQLHYANGQVTLNGKQMTLAQFAGLFGV
CHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHEECCCEEEECCCEEHHHHHHHHHHH
LGGMDSAPVGAQ
HCCCCCCCCCCC
>Mature Secondary Structure
MKKSAVAVAVIVVLGAAWSGASWYTGKLIEQRMDGEVARLNESLTQRLPQAGLKISYQDY
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCHHCCEEEHHHH
QRGVFSSRVHYIIQADPAAKQDALLKPGQQLALNETISHGPFPLARFSLVPSMAVVYSEL
HCCHHHCCEEEEEECCCCCCCCHHCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHHH
ANTPLVAPLFTANKGTSPLDAYTRIAYSGDNSTEITLQPLSLQTGENKIDFGGAQIKADI
CCCCCEEEEEECCCCCCCHHHHHEEEECCCCCCEEEEEEEEECCCCCEECCCCCEEHHHH
ARDLSRMDLTADARSLSIDAPNGGQRETLSLTGATFTTHSKMGKFGLNIGEQQIAAKRLS
HHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCEEEEHHHCCCCCCCCCHHHHHHHHHE
LSFDGKESAALDDLAMDASLKEGERTLDARVDYRLGGLQIDGKAFGSGAMTLNLNGFDGH
EEECCCCCHHHHHHHHCCCHHCCCHHHHHEEEEEECCEEECCCCCCCCEEEEEECCCCCC
GVKKFADEYDAFIRRQMNSGNSSNSVAYQQQLAGMLDAALPSLLSGNPQIDLKPVTWKNS
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
AGSSQFDLSLSLSAPAKTEAAAALPPLLQAVRTLDVSLNLSMPMATQIAANAAELEGYQT
CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHCCHHHCCCCCC
DEAQKLAAQQVQGVSAMGQMFKLTTQQDNAIVSQLHYANGQVTLNGKQMTLAQFAGLFGV
CHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHEECCCEEEECCCEEHHHHHHHHHHH
LGGMDSAPVGAQ
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]