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The map label for this gene is ureD [H]

Identifier: 238919953

GI number: 238919953

Start: 1979361

End: 1980323

Strand: Reverse

Name: ureD [H]

Synonym: NT01EI_2057

Alternate gene names: 238919953

Gene position: 1980323-1979361 (Counterclockwise)

Preceding gene: 238919954

Following gene: 238919952

Centisome position: 51.95

GC content: 47.77

Gene sequence:

>963_bases
ATGAATAGGATGCCACAGTATTATTCAGCTACGGAGTGGGTGATGCAGTTAGGACGGGGCGCTCCTGAGTTGGCTGATTA
CCAAGATGAGCCCGCACAGATGGATAGCGGTTGTGTGGGGAAAAAAGCCTATTTAAATTTGGTTTTCGCTCAGCAGGGTG
AGCGTAGCATTCTAGCGAAGATGGAACGGCGAGTGCCCTATCTGGTACAAAAGGCGTTGTATTGGGATCGAGACATGCCT
GGCTTGCCGTGTGTCACGATGATCTCTACGTCAGGCTGTATCTTACAAGGTGACCGTCTGGTGTTGCAGGTTAAGGTTGA
GGAGGGCGCCTGTGGACATGTAACATCACAGTCGGCGACTAAAATCAATCTGATGAATGCCAATTACGCGGCTCAGGTGC
AGCATCTGGAAGTGGAGCGTGCGGGTTATCTTGAGTTTGTTCCTGAGCAGATTATTCCGCATCGGCACTCTCGCTTTATC
TCTGAAACTGTTTTACGTTGTCATCCGGAAGGGACATTACTTTATTCAGAGATTTTGATGTCGGGAAGGAAGTACCATCA
CCAGGATGAGCGGTTTGGCTTTGATGTCTATTCATCGACGGTCAAGGTATTGAATGCCGATGGTGATGAGTGTATGTCTG
AGCGCTACGTCTTGACACCCAGCAAGGGGAGTTTGGATGATATCGGTGTAATGCAACAGTTTGATATTTTTGCCAATGTT
ATTTTACTGACCAGTAAAGAAAATCAGGATCGCATCGTCAGCGGGATCAAACCCCGATTCGACTATGAGAATAAAATAGC
TAGAGGCGTTAGTCGATTGCCAAACGGTGTCGGGTTAGTGTTTAAGGTTCTGACAAATGACTCTGGGCAAGCTAAAGATG
AAGTGCGTCAATTTTGGAAGTTAGCCCGAGAGGTATGCCGGGGCGTCTCCCTGACTATTCCCTACTTTGCCAGGCAGAAA
TAA

Upstream 100 bases:

>100_bases
CGTTATGACCAATTGCAAAACGGGTGAGGGGGTAGAGGAGTTAGTCGATATGATTATGCGTGACTTCTTATTTACACACA
GCGAAATAAAGTGAGACACC

Downstream 100 bases:

>100_bases
TTGTGCGATGACGTCACTGTCTATGGTGGTGTCATCACTGCATGTCGTTTCTGGACTATATAGATATCGTTATCAGTCTA
TAACTATAACTGAATAGGTT

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNRMPQYYSATEWVMQLGRGAPELADYQDEPAQMDSGCVGKKAYLNLVFAQQGERSILAKMERRVPYLVQKALYWDRDMP
GLPCVTMISTSGCILQGDRLVLQVKVEEGACGHVTSQSATKINLMNANYAAQVQHLEVERAGYLEFVPEQIIPHRHSRFI
SETVLRCHPEGTLLYSEILMSGRKYHHQDERFGFDVYSSTVKVLNADGDECMSERYVLTPSKGSLDDIGVMQQFDIFANV
ILLTSKENQDRIVSGIKPRFDYENKIARGVSRLPNGVGLVFKVLTNDSGQAKDEVRQFWKLAREVCRGVSLTIPYFARQK

Sequences:

>Translated_320_residues
MNRMPQYYSATEWVMQLGRGAPELADYQDEPAQMDSGCVGKKAYLNLVFAQQGERSILAKMERRVPYLVQKALYWDRDMP
GLPCVTMISTSGCILQGDRLVLQVKVEEGACGHVTSQSATKINLMNANYAAQVQHLEVERAGYLEFVPEQIIPHRHSRFI
SETVLRCHPEGTLLYSEILMSGRKYHHQDERFGFDVYSSTVKVLNADGDECMSERYVLTPSKGSLDDIGVMQQFDIFANV
ILLTSKENQDRIVSGIKPRFDYENKIARGVSRLPNGVGLVFKVLTNDSGQAKDEVRQFWKLAREVCRGVSLTIPYFARQK
>Mature_320_residues
MNRMPQYYSATEWVMQLGRGAPELADYQDEPAQMDSGCVGKKAYLNLVFAQQGERSILAKMERRVPYLVQKALYWDRDMP
GLPCVTMISTSGCILQGDRLVLQVKVEEGACGHVTSQSATKINLMNANYAAQVQHLEVERAGYLEFVPEQIIPHRHSRFI
SETVLRCHPEGTLLYSEILMSGRKYHHQDERFGFDVYSSTVKVLNADGDECMSERYVLTPSKGSLDDIGVMQQFDIFANV
ILLTSKENQDRIVSGIKPRFDYENKIARGVSRLPNGVGLVFKVLTNDSGQAKDEVRQFWKLAREVCRGVSLTIPYFARQK

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter [H]

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002669 [H]

Pfam domain/function: PF01774 UreD [H]

EC number: NA

Molecular weight: Translated: 36258; Mature: 36258

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRMPQYYSATEWVMQLGRGAPELADYQDEPAQMDSGCVGKKAYLNLVFAQQGERSILAK
CCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCHHHEEEEECCCCCHHHHHH
MERRVPYLVQKALYWDRDMPGLPCVTMISTSGCILQGDRLVLQVKVEEGACGHVTSQSAT
HHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCEEEEEEEECCCCCCCCCCCCCC
KINLMNANYAAQVQHLEVERAGYLEFVPEQIIPHRHSRFISETVLRCHPEGTLLYSEILM
EEEEECCCHHHHHHHHHHHHCCHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
SGRKYHHQDERFGFDVYSSTVKVLNADGDECMSERYVLTPSKGSLDDIGVMQQFDIFANV
CCCCCCCCCHHCCHHHHHCCHHEEECCCHHHHHCCEEECCCCCCCHHHHHHHHHHHHHEE
ILLTSKENQDRIVSGIKPRFDYENKIARGVSRLPNGVGLVFKVLTNDSGQAKDEVRQFWK
EEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHH
LAREVCRGVSLTIPYFARQK
HHHHHHCCCEEECCHHCCCC
>Mature Secondary Structure
MNRMPQYYSATEWVMQLGRGAPELADYQDEPAQMDSGCVGKKAYLNLVFAQQGERSILAK
CCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCHHHEEEEECCCCCHHHHHH
MERRVPYLVQKALYWDRDMPGLPCVTMISTSGCILQGDRLVLQVKVEEGACGHVTSQSAT
HHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCEEEEEEEECCCCCCCCCCCCCC
KINLMNANYAAQVQHLEVERAGYLEFVPEQIIPHRHSRFISETVLRCHPEGTLLYSEILM
EEEEECCCHHHHHHHHHHHHCCHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
SGRKYHHQDERFGFDVYSSTVKVLNADGDECMSERYVLTPSKGSLDDIGVMQQFDIFANV
CCCCCCCCCHHCCHHHHHCCHHEEECCCHHHHHCCEEECCCCCCCHHHHHHHHHHHHHEE
ILLTSKENQDRIVSGIKPRFDYENKIARGVSRLPNGVGLVFKVLTNDSGQAKDEVRQFWK
EEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHH
LAREVCRGVSLTIPYFARQK
HHHHHHCCCEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA