| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919952
Identifier: 238919952
GI number: 238919952
Start: 1978273
End: 1979250
Strand: Reverse
Name: 238919952
Synonym: NT01EI_2056
Alternate gene names: NA
Gene position: 1979250-1978273 (Counterclockwise)
Preceding gene: 238919953
Following gene: 238919951
Centisome position: 51.92
GC content: 45.5
Gene sequence:
>978_bases ATGGATGTTAAAATAGACAAGCTATTAGGTGATGAACGCCATAGTTTTCTGCTGGAGTTTATTGATACAACTCTGCGTGG CTGTGGACAGGTGATGTTTCAAAACAATTCATTGACGGGGGCTTTTTTCTTCGGCGGTATTTTTTTTGATGCTTACTTAA ATAATACTCCGGTGATCGCTTGGGGATGCCTGCTAGGAACGGCTGTGGCGACCTTAACAGGATATCTCATCATACGCGAT CGCACATCCTTGCGTAGTGGTTTATGTGGATATAACGGCTGTTTGGTCGGTGCCGCGTTACCAGTTTTTTTGGTGCCAAC ACCAACGTTATGGTGTGTGTTGATCTTGAGCAGTGCGCTTTCAGTCATCGTGGCGACCAGCATATCTGAGTGCTTGAAGG GCTTGAAGATCGCGGCGTTAACCGGCCCATTTGTTGTGACAACCTGGGTGGTATTACTTGCTAGTTATAACTTTCCTCAG TTGGTCCACATGGGATTACCGGCGACATTTCTGCCGCAGCAGCATACTCATCTGCTCACTCATTCCTATTATCATACTGA ATGGTTAGGCGCATTTAATGGTGTTTCGGAGGTTTTTCTATTTAGTAATATCGTCTCTGGGATGCTCATGTGTATCGGGC TGGCCTGTGGTTCGCTTTGGAATGTTTTCTATGCGGTATTTAGTGCCGTCCTCTCCATGCTGATTGCACTCTGGCTAGGA GGTACCTTGCAAGGTGTTGATGCGGGTATGTTCTCATTTAGTGCCGTATTAACCGGTATTGCTTTAGGCGCTACCTTTAG TAAACCTGGCATGATGAGTTTTTGTTATACCGTTATCGGGGTCTTCTTTGTCGTATTAATGCAAGGAGCATTGAATACAG CATTAGCCCCTTTGGGTATTCCTAGTTTGACGATGCCGTTCGTATTGGCCACATGGGTATTGCTGTTGGTCCATGATAAG ACTGTCTTACAGGATTAA
Upstream 100 bases:
>100_bases ACGTCACTGTCTATGGTGGTGTCATCACTGCATGTCGTTTCTGGACTATATAGATATCGTTATCAGTCTATAACTATAAC TGAATAGGTTGGATGGTCGT
Downstream 100 bases:
>100_bases CTGATAAGCATGATGAACACACTGCTTAGACAGGCATGGAGAACGCAGAGATATATTAGGAAAGGCTAGCACACAGCAAT ATATTACGCTCTGGTTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: Eukaryotic-Type Low-Affinity Urea Transporter; Urea Transport Protein ApUT; UreA Transporter
Number of amino acids: Translated: 325; Mature: 325
Protein sequence:
>325_residues MDVKIDKLLGDERHSFLLEFIDTTLRGCGQVMFQNNSLTGAFFFGGIFFDAYLNNTPVIAWGCLLGTAVATLTGYLIIRD RTSLRSGLCGYNGCLVGAALPVFLVPTPTLWCVLILSSALSVIVATSISECLKGLKIAALTGPFVVTTWVVLLASYNFPQ LVHMGLPATFLPQQHTHLLTHSYYHTEWLGAFNGVSEVFLFSNIVSGMLMCIGLACGSLWNVFYAVFSAVLSMLIALWLG GTLQGVDAGMFSFSAVLTGIALGATFSKPGMMSFCYTVIGVFFVVLMQGALNTALAPLGIPSLTMPFVLATWVLLLVHDK TVLQD
Sequences:
>Translated_325_residues MDVKIDKLLGDERHSFLLEFIDTTLRGCGQVMFQNNSLTGAFFFGGIFFDAYLNNTPVIAWGCLLGTAVATLTGYLIIRD RTSLRSGLCGYNGCLVGAALPVFLVPTPTLWCVLILSSALSVIVATSISECLKGLKIAALTGPFVVTTWVVLLASYNFPQ LVHMGLPATFLPQQHTHLLTHSYYHTEWLGAFNGVSEVFLFSNIVSGMLMCIGLACGSLWNVFYAVFSAVLSMLIALWLG GTLQGVDAGMFSFSAVLTGIALGATFSKPGMMSFCYTVIGVFFVVLMQGALNTALAPLGIPSLTMPFVLATWVLLLVHDK TVLQD >Mature_325_residues MDVKIDKLLGDERHSFLLEFIDTTLRGCGQVMFQNNSLTGAFFFGGIFFDAYLNNTPVIAWGCLLGTAVATLTGYLIIRD RTSLRSGLCGYNGCLVGAALPVFLVPTPTLWCVLILSSALSVIVATSISECLKGLKIAALTGPFVVTTWVVLLASYNFPQ LVHMGLPATFLPQQHTHLLTHSYYHTEWLGAFNGVSEVFLFSNIVSGMLMCIGLACGSLWNVFYAVFSAVLSMLIALWLG GTLQGVDAGMFSFSAVLTGIALGATFSKPGMMSFCYTVIGVFFVVLMQGALNTALAPLGIPSLTMPFVLATWVLLLVHDK TVLQD
Specific function: Unknown
COG id: COG4413
COG function: function code E; Urea transporter
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI157694503, Length=322, Percent_Identity=27.9503105590062, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI289802991, Length=331, Percent_Identity=27.4924471299094, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI226371772, Length=318, Percent_Identity=27.0440251572327, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI226371768, Length=318, Percent_Identity=27.0440251572327, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI225690519, Length=318, Percent_Identity=27.0440251572327, Blast_Score=79, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34983; Mature: 34983
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVKIDKLLGDERHSFLLEFIDTTLRGCGQVMFQNNSLTGAFFFGGIFFDAYLNNTPVIA CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCHHH WGCLLGTAVATLTGYLIIRDRTSLRSGLCGYNGCLVGAALPVFLVPTPTLWCVLILSSAL HHHHHHHHHHHHHHHHEEECCHHHHCCCCCCCCHHHHHHCHHEECCCHHHHHHHHHHHHH SVIVATSISECLKGLKIAALTGPFVVTTWVVLLASYNFPQLVHMGLPATFLPQQHTHLLT HHHHHHHHHHHHHCCEEHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHH HSYYHTEWLGAFNGVSEVFLFSNIVSGMLMCIGLACGSLWNVFYAVFSAVLSMLIALWLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GTLQGVDAGMFSFSAVLTGIALGATFSKPGMMSFCYTVIGVFFVVLMQGALNTALAPLGI CCHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PSLTMPFVLATWVLLLVHDKTVLQD CHHHHHHHHHHHHHHHHHCHHHHCC >Mature Secondary Structure MDVKIDKLLGDERHSFLLEFIDTTLRGCGQVMFQNNSLTGAFFFGGIFFDAYLNNTPVIA CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHCCCCHHH WGCLLGTAVATLTGYLIIRDRTSLRSGLCGYNGCLVGAALPVFLVPTPTLWCVLILSSAL HHHHHHHHHHHHHHHHEEECCHHHHCCCCCCCCHHHHHHCHHEECCCHHHHHHHHHHHHH SVIVATSISECLKGLKIAALTGPFVVTTWVVLLASYNFPQLVHMGLPATFLPQQHTHLLT HHHHHHHHHHHHHCCEEHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHH HSYYHTEWLGAFNGVSEVFLFSNIVSGMLMCIGLACGSLWNVFYAVFSAVLSMLIALWLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GTLQGVDAGMFSFSAVLTGIALGATFSKPGMMSFCYTVIGVFFVVLMQGALNTALAPLGI CCHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PSLTMPFVLATWVLLLVHDKTVLQD CHHHHHHHHHHHHHHHHHCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA