| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238919915
Identifier: 238919915
GI number: 238919915
Start: 1947132
End: 1947950
Strand: Reverse
Name: 238919915
Synonym: NT01EI_2019
Alternate gene names: NA
Gene position: 1947950-1947132 (Counterclockwise)
Preceding gene: 238919916
Following gene: 238919914
Centisome position: 51.1
GC content: 64.22
Gene sequence:
>819_bases ATGCCTATCGCCATCGAACAACTGATCAAGATGTTTGACCCGCGCAGCGTCAGCGCAGAATGCCTGTACCTGATCCGGGC GGTGCCAGGGATCACCCGGGAGCAAATCCTGGGCGCGTTTGCAGCGGTGGCACAGTGCCATCCGCTCGGCTTCGATTTGC TGCTGGCCCGCTACCGGGAAGATCGTCAGGCCGAACAGCGTGCGCGGCGGGCGGCGGCTGATAGGGTGTGCCGGAGCCCA CATCCCCCTGATGGTACCGCCGTCTGCCAGCTGGCCGTCACCGTGGCACTGGGGCGGACGCTGCCCGCCCAGCGGGTGGT ATTGGCGGCGCTGCTGCGCAAACATGGCCCCCGGGCAACGCTGGCAGCCAAGCAGCTGGCCGCTATTCAGCGCCAGCAAA AGGGACTGGAGAAAGCCCGGGTAATGCTGAGTGAGGGGGGCTGGCGTTACCAGCGTAATCTGGCGCAGCACGATGCGTTG GCGGGCCGTTCCGTGGCTCTCCGCCGGGCGTTGGCCGACTGGGCCGACGCAGAGGCGGCCCGTTCACCCCATTGCCCACG TTGCCGAGGCAGCGGCCAGCTGTTGCGCCCGCAGCCCCATTGCTGTGATACCTGTGGTGGCCGAGGAAAAATCAGTGTGA CCGCTGACCATTTCCGGCGTTCGCTGGTGGATAAGGGCATGGTGATAACGCCTGAGGTATGGCGGTCAGAGTACCAGTCA TGGGTGAATGATACGCTCAGTGGGTTATATCAGGAGATGCAGCTGGCTGGCGATGCCTTGTCGATACGGTTAATGTTGGA GGGGCAGGCGGTGGCATGA
Upstream 100 bases:
>100_bases ACAGGGCTCTGAAAATATCGGGCGTTTTTAATGTTATTTAATTGATATTCCCATGCTTTTAAATAGGATAAACCAGACTC CCTCATGGAGGATCGGGTTT
Downstream 100 bases:
>100_bases AGAGATTGCCAATGGTTAATAAGTGAGCTAAATTCGGAAAGATGACCAAGCTATGTTTATCGCCGATTAATCGCGGCATC CTTCGATATATATCATCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MPIAIEQLIKMFDPRSVSAECLYLIRAVPGITREQILGAFAAVAQCHPLGFDLLLARYREDRQAEQRARRAAADRVCRSP HPPDGTAVCQLAVTVALGRTLPAQRVVLAALLRKHGPRATLAAKQLAAIQRQQKGLEKARVMLSEGGWRYQRNLAQHDAL AGRSVALRRALADWADAEAARSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFRRSLVDKGMVITPEVWRSEYQS WVNDTLSGLYQEMQLAGDALSIRLMLEGQAVA
Sequences:
>Translated_272_residues MPIAIEQLIKMFDPRSVSAECLYLIRAVPGITREQILGAFAAVAQCHPLGFDLLLARYREDRQAEQRARRAAADRVCRSP HPPDGTAVCQLAVTVALGRTLPAQRVVLAALLRKHGPRATLAAKQLAAIQRQQKGLEKARVMLSEGGWRYQRNLAQHDAL AGRSVALRRALADWADAEAARSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFRRSLVDKGMVITPEVWRSEYQS WVNDTLSGLYQEMQLAGDALSIRLMLEGQAVA >Mature_271_residues PIAIEQLIKMFDPRSVSAECLYLIRAVPGITREQILGAFAAVAQCHPLGFDLLLARYREDRQAEQRARRAAADRVCRSPH PPDGTAVCQLAVTVALGRTLPAQRVVLAALLRKHGPRATLAAKQLAAIQRQQKGLEKARVMLSEGGWRYQRNLAQHDALA GRSVALRRALADWADAEAARSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFRRSLVDKGMVITPEVWRSEYQSW VNDTLSGLYQEMQLAGDALSIRLMLEGQAVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29944; Mature: 29813
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIAIEQLIKMFDPRSVSAECLYLIRAVPGITREQILGAFAAVAQCHPLGFDLLLARYRE CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH DRQAEQRARRAAADRVCRSPHPPDGTAVCQLAVTVALGRTLPAQRVVLAALLRKHGPRAT HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHH LAAKQLAAIQRQQKGLEKARVMLSEGGWRYQRNLAQHDALAGRSVALRRALADWADAEAA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFRRSLVDKGMVITPEVWRSEYQS CCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEHHHHHHHHHHCCCEECHHHHHHHHHH WVNDTLSGLYQEMQLAGDALSIRLMLEGQAVA HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC >Mature Secondary Structure PIAIEQLIKMFDPRSVSAECLYLIRAVPGITREQILGAFAAVAQCHPLGFDLLLARYRE CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH DRQAEQRARRAAADRVCRSPHPPDGTAVCQLAVTVALGRTLPAQRVVLAALLRKHGPRAT HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHH LAAKQLAAIQRQQKGLEKARVMLSEGGWRYQRNLAQHDALAGRSVALRRALADWADAEAA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFRRSLVDKGMVITPEVWRSEYQS CCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEHHHHHHHHHHCCCEECHHHHHHHHHH WVNDTLSGLYQEMQLAGDALSIRLMLEGQAVA HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA