| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919894
Identifier: 238919894
GI number: 238919894
Start: 1930263
End: 1931831
Strand: Reverse
Name: 238919894
Synonym: NT01EI_1998
Alternate gene names: NA
Gene position: 1931831-1930263 (Counterclockwise)
Preceding gene: 238919896
Following gene: 238919893
Centisome position: 50.67
GC content: 58.76
Gene sequence:
>1569_bases TTGCCAGAAACCAATGCCACCCTGGCACAAAACTGTCATTTTCGGCACGGCGTCATCACTCCACTTTATATGGATAAAGA CGAGGCGATCCCGTTTTCTCTCGATCCTCAGACGCTGTTCCATTACCGGGATGATGTCTGGTTTACCTGGGCCGGGCGGG TTCAGGCCATACGTAGCCCGGTGGCGCAGGATCAGTATGACCGGGTCTATTTTACCGATGGTCGGCATCCACAGGTCACC AGTGCCCAGATTGCCTCTCAGGGCCACGGACGCTATCCGGCGGCCAGTTATCGGCTTGGTATCCCGGCCCCCGAGCACCC GCCGACGATTGGTGAAATCCATTATCCGGAGGATGAGCAGCCAAATGATCCACTGGATGACGAAACGCGGTTTTATGTGG AAACCTACGTCACTGCCTATGGGGAAGAGGGGCCGCCTGGACCGGTATCCAGAGAGGTGAGTATTCCCTATCCCGGTAGC CGAGTGACGCTGCATCTAGCCCCCTTGATTGCCCAAAACCATAACATTTCCCGTCGCCGGATTTATCGTACCGTTACCGG CGGTGGGGCTGCGGATTATCTGCTTGTTACGGAGCTGGCTCTTGGCCAGGAAAGCTATGTTGATGCCTTACCTTCTGCTG AGTTGGGCGGTGTGCTGGAAACCTATGACTATCTGATGCCACCGGACAATATGGTGGGGCTGTGTTTGATGGCGAACGGC ATCGCGGCTGCTTTTGCCGGTAATGAGGTGATGTTTTCAGAGCCCTATTTACCCTACGCCTGGCCGGGTGCCTATAGACA GAGTACCGAGCATAATATTGTGGCCATTGCCGCGTTGGGTACTGTGCTGGTGGTGGTGACACAAGGGTACGCCTATCTGT TCAGCGGCGTCTCGCCGGGCAGCATGACCAGCAGCAAACTACCGATTATGCAGGCGTGTCTCAGCACTGACAGCATGGTA GAGATGGATGGCTTTGTGCTGTATGCCGCGGCCAATGGGCTGGTGTCCGTCGATGCTGCCGGCAATGCCCTGGTGGCAAC GGAAGCGATTGTTGAGCCACGTCAGTGGCGCCAGGGCTTTCACCCTGAGACTATCCGCGCCTGGCGGGTGGAGGGCGAGT ATTTTGCTCTGTATCGGGATGCGCGGGATCGCCCCGCAGGATTTATTTTCGATCCGCGGGCGATGGATCTACGCCGTGTG GATACCGACTTTGCGTGCGCCGGTTATCGACTGGAGAACGAACAGCTGTATGTGGTCAGGCGGCGGCAGCTGTATCAGCT GCAGCAGGGGACACAGCCCCACCAGATGCGGTGGCGATCCCGGGTGTTTCTGGCCCACGCCGCGGTGTCGTTTGCGTGCC TGCGGGTGCTCAGTCCCCAGTTGCTGCGGGTGGGGGTCCAGATTGTGATTGACGGTGAGGTGGCGTTCAGCCTGCCGCCT GGCGCACTGACGGAGCCCTGCGTGAAGCTGCCGGTACTGTCCGGCCGTCGCTGGCAGATCGAGTGCTTTGGTACCGCTCA GGTCGAGCGCCTGACGCTGAGCACATCGATGGATACGCTGCCGCCATGA
Upstream 100 bases:
>100_bases AATACTGAGCTGCATCAGTTTATAAGTGCTTCCGATAACGATGTCCTCGATTGATATTTCCCTGATGCGCGGTGAACAGC CCCGGATCGTTAGCCACCTT
Downstream 100 bases:
>100_bases GTAAACGCCACACGTTTCGCGCCGGACGCAGTCTGGACGCGCTGTATGAGAACGTTGAACTGATGACCGGGCAGCGCGGT GATGGGCAGGATAAGGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MPETNATLAQNCHFRHGVITPLYMDKDEAIPFSLDPQTLFHYRDDVWFTWAGRVQAIRSPVAQDQYDRVYFTDGRHPQVT SAQIASQGHGRYPAASYRLGIPAPEHPPTIGEIHYPEDEQPNDPLDDETRFYVETYVTAYGEEGPPGPVSREVSIPYPGS RVTLHLAPLIAQNHNISRRRIYRTVTGGGAADYLLVTELALGQESYVDALPSAELGGVLETYDYLMPPDNMVGLCLMANG IAAAFAGNEVMFSEPYLPYAWPGAYRQSTEHNIVAIAALGTVLVVVTQGYAYLFSGVSPGSMTSSKLPIMQACLSTDSMV EMDGFVLYAAANGLVSVDAAGNALVATEAIVEPRQWRQGFHPETIRAWRVEGEYFALYRDARDRPAGFIFDPRAMDLRRV DTDFACAGYRLENEQLYVVRRRQLYQLQQGTQPHQMRWRSRVFLAHAAVSFACLRVLSPQLLRVGVQIVIDGEVAFSLPP GALTEPCVKLPVLSGRRWQIECFGTAQVERLTLSTSMDTLPP
Sequences:
>Translated_522_residues MPETNATLAQNCHFRHGVITPLYMDKDEAIPFSLDPQTLFHYRDDVWFTWAGRVQAIRSPVAQDQYDRVYFTDGRHPQVT SAQIASQGHGRYPAASYRLGIPAPEHPPTIGEIHYPEDEQPNDPLDDETRFYVETYVTAYGEEGPPGPVSREVSIPYPGS RVTLHLAPLIAQNHNISRRRIYRTVTGGGAADYLLVTELALGQESYVDALPSAELGGVLETYDYLMPPDNMVGLCLMANG IAAAFAGNEVMFSEPYLPYAWPGAYRQSTEHNIVAIAALGTVLVVVTQGYAYLFSGVSPGSMTSSKLPIMQACLSTDSMV EMDGFVLYAAANGLVSVDAAGNALVATEAIVEPRQWRQGFHPETIRAWRVEGEYFALYRDARDRPAGFIFDPRAMDLRRV DTDFACAGYRLENEQLYVVRRRQLYQLQQGTQPHQMRWRSRVFLAHAAVSFACLRVLSPQLLRVGVQIVIDGEVAFSLPP GALTEPCVKLPVLSGRRWQIECFGTAQVERLTLSTSMDTLPP >Mature_521_residues PETNATLAQNCHFRHGVITPLYMDKDEAIPFSLDPQTLFHYRDDVWFTWAGRVQAIRSPVAQDQYDRVYFTDGRHPQVTS AQIASQGHGRYPAASYRLGIPAPEHPPTIGEIHYPEDEQPNDPLDDETRFYVETYVTAYGEEGPPGPVSREVSIPYPGSR VTLHLAPLIAQNHNISRRRIYRTVTGGGAADYLLVTELALGQESYVDALPSAELGGVLETYDYLMPPDNMVGLCLMANGI AAAFAGNEVMFSEPYLPYAWPGAYRQSTEHNIVAIAALGTVLVVVTQGYAYLFSGVSPGSMTSSKLPIMQACLSTDSMVE MDGFVLYAAANGLVSVDAAGNALVATEAIVEPRQWRQGFHPETIRAWRVEGEYFALYRDARDRPAGFIFDPRAMDLRRVD TDFACAGYRLENEQLYVVRRRQLYQLQQGTQPHQMRWRSRVFLAHAAVSFACLRVLSPQLLRVGVQIVIDGEVAFSLPPG ALTEPCVKLPVLSGRRWQIECFGTAQVERLTLSTSMDTLPP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57999; Mature: 57868
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPETNATLAQNCHFRHGVITPLYMDKDEAIPFSLDPQTLFHYRDDVWFTWAGRVQAIRSP CCCCCCCHHHCCEECCCCCCEEEECCCCCCCCCCCHHHHHEECCCEEEEECCHHHHHHCC VAQDQYDRVYFTDGRHPQVTSAQIASQGHGRYPAASYRLGIPAPEHPPTIGEIHYPEDEQ CCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCC PNDPLDDETRFYVETYVTAYGEEGPPGPVSREVSIPYPGSRVTLHLAPLIAQNHNISRRR CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCHHE IYRTVTGGGAADYLLVTELALGQESYVDALPSAELGGVLETYDYLMPPDNMVGLCLMANG EEEEECCCCCCHHHEEHHHHCCCHHHHHCCCCHHHCCHHHHHHCCCCCCCCEEEEEECCC IAAAFAGNEVMFSEPYLPYAWPGAYRQSTEHNIVAIAALGTVLVVVTQGYAYLFSGVSPG EEEEECCCEEEEECCCCCCCCCCHHCCCCCCCEEEEEHHHHHHHHHHCCCEEEECCCCCC SMTSSKLPIMQACLSTDSMVEMDGFVLYAAANGLVSVDAAGNALVATEAIVEPRQWRQGF CCCCCCCHHHHHHHCCCCEEECCCEEEEEECCCEEEEECCCCEEEEHHHHCCCHHHHCCC HPETIRAWRVEGEYFALYRDARDRPAGFIFDPRAMDLRRVDTDFACAGYRLENEQLYVVR CCCCEEEEEECCCEEEEEECCCCCCCCEEECCCCCCHHHCCCCCEEECEEECCCCEEEEH RRQLYQLQQGTQPHQMRWRSRVFLAHAAVSFACLRVLSPQLLRVGVQIVIDGEVAFSLPP HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECEEEEECCEEEEECCC GALTEPCVKLPVLSGRRWQIECFGTAQVERLTLSTSMDTLPP CCCCCCHHCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC >Mature Secondary Structure PETNATLAQNCHFRHGVITPLYMDKDEAIPFSLDPQTLFHYRDDVWFTWAGRVQAIRSP CCCCCCHHHCCEECCCCCCEEEECCCCCCCCCCCHHHHHEECCCEEEEECCHHHHHHCC VAQDQYDRVYFTDGRHPQVTSAQIASQGHGRYPAASYRLGIPAPEHPPTIGEIHYPEDEQ CCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCCC PNDPLDDETRFYVETYVTAYGEEGPPGPVSREVSIPYPGSRVTLHLAPLIAQNHNISRRR CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEECCCCCCEEEEEEEEEECCCCCCCHHE IYRTVTGGGAADYLLVTELALGQESYVDALPSAELGGVLETYDYLMPPDNMVGLCLMANG EEEEECCCCCCHHHEEHHHHCCCHHHHHCCCCHHHCCHHHHHHCCCCCCCCEEEEEECCC IAAAFAGNEVMFSEPYLPYAWPGAYRQSTEHNIVAIAALGTVLVVVTQGYAYLFSGVSPG EEEEECCCEEEEECCCCCCCCCCHHCCCCCCCEEEEEHHHHHHHHHHCCCEEEECCCCCC SMTSSKLPIMQACLSTDSMVEMDGFVLYAAANGLVSVDAAGNALVATEAIVEPRQWRQGF CCCCCCCHHHHHHHCCCCEEECCCEEEEEECCCEEEEECCCCEEEEHHHHCCCHHHHCCC HPETIRAWRVEGEYFALYRDARDRPAGFIFDPRAMDLRRVDTDFACAGYRLENEQLYVVR CCCCEEEEEECCCEEEEEECCCCCCCCEEECCCCCCHHHCCCCCEEECEEECCCCEEEEH RRQLYQLQQGTQPHQMRWRSRVFLAHAAVSFACLRVLSPQLLRVGVQIVIDGEVAFSLPP HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECEEEEECCEEEEECCC GALTEPCVKLPVLSGRRWQIECFGTAQVERLTLSTSMDTLPP CCCCCCHHCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA