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The map label for this gene is slp [H]

Identifier: 238919868

GI number: 238919868

Start: 1900072

End: 1900656

Strand: Direct

Name: slp [H]

Synonym: NT01EI_1972

Alternate gene names: 238919868

Gene position: 1900072-1900656 (Clockwise)

Preceding gene: 238919867

Following gene: 238919869

Centisome position: 49.84

GC content: 51.62

Gene sequence:

>585_bases
ATGAAGTGCCGACATTCACTATTCGCTGCTGCACTCTGTGCACCGTTAATGCTAAGCGGGTGTGCCGCTATTCCCAGAGA
TATACAGGGCAATAACAGCCCGATCCTGCAAAAAAATTTTAATCAGATCCATATGGCGCCCAATCTCTACACGGGTCAGC
AGGTTCGCCTGGGCGGACGGGTTATCAACGTAATTAATCTGCCTAAACAGACGCTGCTGGAGATCGCAGTGTTACCGTTA
AACAGCGCCGCCAGACCGCAGCTAAATAAGCCTTATCAAGGAAGGCTTATCGCCCGTAGCGATCGATTCCTCGATCCGGT
CAACTACCGTAATCATCTGCTCACGGTATTGGGAACCCTCAGCGGAAGCGAGATGGGTAAAATAGGCTCGGCACCTTATA
CCTTTGTCCGACTGAATATTCAGGGAATTCAACTCTGGCAGGTGAGTGAAACGCAGCCACCGGTGGCTGCCTGGGACTAC
GGTATTGGACCTAACTGGCCTCTGAGCTGGCAAAACCAGCATAATAGCGATCTTGGCTGGGGATGGTATCCGATACTACA
GCCGGAAACAGCCTCCGTGCACTAA

Upstream 100 bases:

>100_bases
GTGAACAGCCCAAGACCAAAATGGAAAATCAAACAGCCTAATCGGATAGGCTCTTAGTAATAAATATGATATTGGATATG
AGTATGTAAGGAGAGTCATG

Downstream 100 bases:

>100_bases
AAATGCGCAGAAATGCGTTCCACTGCGTATAAATCATACGATGCAGCCGTCAAAACAACCGACGACTGTATTTTTTATGT
GCAAAAGAAATGGCGCTAGA

Product: outer membrane protein slp

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKCRHSLFAAALCAPLMLSGCAAIPRDIQGNNSPILQKNFNQIHMAPNLYTGQQVRLGGRVINVINLPKQTLLEIAVLPL
NSAARPQLNKPYQGRLIARSDRFLDPVNYRNHLLTVLGTLSGSEMGKIGSAPYTFVRLNIQGIQLWQVSETQPPVAAWDY
GIGPNWPLSWQNQHNSDLGWGWYPILQPETASVH

Sequences:

>Translated_194_residues
MKCRHSLFAAALCAPLMLSGCAAIPRDIQGNNSPILQKNFNQIHMAPNLYTGQQVRLGGRVINVINLPKQTLLEIAVLPL
NSAARPQLNKPYQGRLIARSDRFLDPVNYRNHLLTVLGTLSGSEMGKIGSAPYTFVRLNIQGIQLWQVSETQPPVAAWDY
GIGPNWPLSWQNQHNSDLGWGWYPILQPETASVH
>Mature_194_residues
MKCRHSLFAAALCAPLMLSGCAAIPRDIQGNNSPILQKNFNQIHMAPNLYTGQQVRLGGRVINVINLPKQTLLEIAVLPL
NSAARPQLNKPYQGRLIARSDRFLDPVNYRNHLLTVLGTLSGSEMGKIGSAPYTFVRLNIQGIQLWQVSETQPPVAAWDY
GIGPNWPLSWQNQHNSDLGWGWYPILQPETASVH

Specific function: The induction of slp may help to stabilize the outer membrane during carbon starvation and stationary phase [H]

COG id: COG3065

COG function: function code M; Starvation-inducible outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082278, Length=160, Percent_Identity=51.875, Blast_Score=176, Evalue=8e-46,
Organism=Escherichia coli, GI1788108, Length=150, Percent_Identity=44, Blast_Score=130, Evalue=7e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004658 [H]

Pfam domain/function: PF03843 Slp [H]

EC number: NA

Molecular weight: Translated: 21558; Mature: 21558

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCRHSLFAAALCAPLMLSGCAAIPRDIQGNNSPILQKNFNQIHMAPNLYTGQQVRLGGR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEEEECCE
VINVINLPKQTLLEIAVLPLNSAARPQLNKPYQGRLIARSDRFLDPVNYRNHLLTVLGTL
EEEEEECCHHHHHEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
SGSEMGKIGSAPYTFVRLNIQGIQLWQVSETQPPVAAWDYGIGPNWPLSWQNQHNSDLGW
CCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
GWYPILQPETASVH
CEEEEECCCCCCCC
>Mature Secondary Structure
MKCRHSLFAAALCAPLMLSGCAAIPRDIQGNNSPILQKNFNQIHMAPNLYTGQQVRLGGR
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEEEECCE
VINVINLPKQTLLEIAVLPLNSAARPQLNKPYQGRLIARSDRFLDPVNYRNHLLTVLGTL
EEEEEECCHHHHHEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
SGSEMGKIGSAPYTFVRLNIQGIQLWQVSETQPPVAAWDYGIGPNWPLSWQNQHNSDLGW
CCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
GWYPILQPETASVH
CEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8022277; 8041620; 9278503 [H]