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The map label for this gene is soxS [H]

Identifier: 238919866

GI number: 238919866

Start: 1897364

End: 1897723

Strand: Direct

Name: soxS [H]

Synonym: NT01EI_1970

Alternate gene names: 238919866

Gene position: 1897364-1897723 (Clockwise)

Preceding gene: 238919865

Following gene: 238919867

Centisome position: 49.77

GC content: 44.44

Gene sequence:

>360_bases
ATGGTTAGAGATAAGTTTATTTTAAAAAGTTTTTCAATAATTAATCTCTGGATTGCCAACCATGTCCACCTTGGAATTAA
AAGCGCCGACGTGATAGCGATTTCAGGTTATTCCCGCTCTTATTTTCTTCGCGAATTTGAACTGGCCATGGGAACGACAC
TGGCAAACTATATTCGTCTCGAACGTCTCAAGCTCTCACTGCAGCAGTTAGAAGAGACTGAACTGAGAATTAAGGAGATT
AGCCATGCGCTTGGCTATCCCAGCCAAAGTACATTTTGCCAGATATTCAAGAATCAGTATCGCGTCTCACCGTCCGAGTA
TCGCCTCCTGTGTCGTAGGAGCACCCGACTGGCAAGCTAG

Upstream 100 bases:

>100_bases
GGAGTTTATTCTTAACGTCCACTTTAATTTTTCATGTCAGGCTGAAACCGTTATTTTTGAACTTTCACTACGCCACGCAT
AAACAGTAGGATATTGTACT

Downstream 100 bases:

>100_bases
CCATTGCTTTCCCATAACGCCGCCGGTCTTCGGCACTTTCGTGCACCATGGGAAAGTATTTCGCAATGTAAAAATAATCT
TATATATTAACACCCTCCAT

Product: DNA-binding transcriptional dual regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MVRDKFILKSFSIINLWIANHVHLGIKSADVIAISGYSRSYFLREFELAMGTTLANYIRLERLKLSLQQLEETELRIKEI
SHALGYPSQSTFCQIFKNQYRVSPSEYRLLCRRSTRLAS

Sequences:

>Translated_119_residues
MVRDKFILKSFSIINLWIANHVHLGIKSADVIAISGYSRSYFLREFELAMGTTLANYIRLERLKLSLQQLEETELRIKEI
SHALGYPSQSTFCQIFKNQYRVSPSEYRLLCRRSTRLAS
>Mature_119_residues
MVRDKFILKSFSIINLWIANHVHLGIKSADVIAISGYSRSYFLREFELAMGTTLANYIRLERLKLSLQQLEETELRIKEI
SHALGYPSQSTFCQIFKNQYRVSPSEYRLLCRRSTRLAS

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=92, Percent_Identity=40.2173913043478, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1789993, Length=92, Percent_Identity=39.1304347826087, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 13890; Mature: 13890

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRDKFILKSFSIINLWIANHVHLGIKSADVIAISGYSRSYFLREFELAMGTTLANYIRL
CCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ERLKLSLQQLEETELRIKEISHALGYPSQSTFCQIFKNQYRVSPSEYRLLCRRSTRLAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVRDKFILKSFSIINLWIANHVHLGIKSADVIAISGYSRSYFLREFELAMGTTLANYIRL
CCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
ERLKLSLQQLEETELRIKEISHALGYPSQSTFCQIFKNQYRVSPSEYRLLCRRSTRLAS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]