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The map label for this gene is ydgI [H]

Identifier: 238919854

GI number: 238919854

Start: 1884880

End: 1886271

Strand: Reverse

Name: ydgI [H]

Synonym: NT01EI_1958

Alternate gene names: 238919854

Gene position: 1886271-1884880 (Counterclockwise)

Preceding gene: 238919855

Following gene: 238919850

Centisome position: 49.48

GC content: 58.26

Gene sequence:

>1392_bases
TTGGAAAAAAAACTCGGACTTACCGCCCTGACGGCGCTGGTATTGAGCTCTATGCTCGGCGCCGGTGTATTCAGCCTGCC
GCAAAACATGGCGGATGTGGCAAGCCCTGCAGCTTTATTGATCGGCTGGGCTATTACCGGCGTTGGCATTCTGTTTCTGG
CGCTGGCCATGTTGTTGTTGACCCGCTTACGCCCCGATCTGGACGGCGGTATCTTTACTTACGCCAAAGAGGGGTTCGGC
GAGCTGGTGGGTTTTTGCTCAGCCTGGGGATACTGGCTCTGCGCCGTGATCGCCAACGTATCCTATCTGGTCATCGTGTT
TGCCGCCCTGAGTTTTTTCACCGATTCACCGCAGCAGACGCTGTTCGGTGATGGTAATACCTGGCAGGCGGTGATCGGCG
AATCCATTCTGCTATGGGTCGTGCACTTTATGGTGCTGCGCGGGGTTAAAACCGCAGCGGGGATCAACCTGGCCGCAACG
CTGGCCAAGCTGCTGCCGCTGGGACTGTTTGTGATCCTGGCCGCCATCGCCTTCCGCCTGGATACGTTTAAGATCGACTT
TACCGGACTGAAGATGGGTGTACCGGTCTGGGAGCAGGTCAAGAGCACCATGTTGTTTACCCTGTGGGTCTTTATTGGCG
TGGAAGGTGCCGTTGTTGTCTCCGCCCGCGCCCGCCATAAGCGGGATGTGGGCAGAGCGACAATGCTGGCGGTCGTCTCC
GCGCTGGTGGTCTATCTGCTGATAACCCTGCTCTCCCTCGGCGTGGTACCGCGGGCTGAACTGGCGGAAATGCGCAACCC
CTCCATGGCCGGACTGATGGTGAAGATGATCGGCCCGGTTGGTGAAATCGTGATTGCCGGCGGACTGATTATCTCCGTCT
GTGGTGCCTACCTGAGCTGGACAATCATGGCGGCAGAGGTTCCATTCCTGGCCTCGCAGCACGGGGCCTTCCCGAAAATC
TTCGGTAAACAGAATGCCAAAGAGGCTCCGGCCTCTTCACTGTGGCTGACCAACGGCGCGGTGCAGGTGACGCTGATCAT
CATTTGGGCGACCGGCGCAAACTACAATAACTTGCTGACCATCGCCTCCGAGATGATCTTGGTTCCCTACTTCCTGGTCG
GTGCCTTCCTGTATAAGGTGGCGCGTGAAAAAGGCGATCGCTGGATTACACTGGCGGCCATTGGAGCCTGTGCCTATGGT
CTGTGGTTACTGTACGCCTCCGGGCTGACACACTTGCTGATGTCAGTGCTGCTGTATGCACCGGGTCTGCTGGTCTTTAT
GCATGCACGCCGCTCTCAGGGCGATCGCCAGCGGATGAGCGTGTTGGAGCGCAGCGGGATTTGCCTGCTCCTGATGGCAA
CCCTGCCTGCCGGTTGGTTCATGCTGCACTGA

Upstream 100 bases:

>100_bases
CCACTTTTACCGGCCAGCCCCTGCTGAGCCCGTCATCGTCAGTTTTTACATCGTAAAAATGTAAAATATTGGTTAATTTA
TCTATTTTTTGGATTTTGCC

Downstream 100 bases:

>100_bases
GTGCATCTCGCCATGGCGAGCCCGTGAGACCTTTCAGAGGGCCGCAGCGCTATCCGCTGCGGCCTTTTTTATCTTGCTTG
GCGACTCTAGCCAAGTGGCG

Product: arginine/ornithine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MEKKLGLTALTALVLSSMLGAGVFSLPQNMADVASPAALLIGWAITGVGILFLALAMLLLTRLRPDLDGGIFTYAKEGFG
ELVGFCSAWGYWLCAVIANVSYLVIVFAALSFFTDSPQQTLFGDGNTWQAVIGESILLWVVHFMVLRGVKTAAGINLAAT
LAKLLPLGLFVILAAIAFRLDTFKIDFTGLKMGVPVWEQVKSTMLFTLWVFIGVEGAVVVSARARHKRDVGRATMLAVVS
ALVVYLLITLLSLGVVPRAELAEMRNPSMAGLMVKMIGPVGEIVIAGGLIISVCGAYLSWTIMAAEVPFLASQHGAFPKI
FGKQNAKEAPASSLWLTNGAVQVTLIIIWATGANYNNLLTIASEMILVPYFLVGAFLYKVAREKGDRWITLAAIGACAYG
LWLLYASGLTHLLMSVLLYAPGLLVFMHARRSQGDRQRMSVLERSGICLLLMATLPAGWFMLH

Sequences:

>Translated_463_residues
MEKKLGLTALTALVLSSMLGAGVFSLPQNMADVASPAALLIGWAITGVGILFLALAMLLLTRLRPDLDGGIFTYAKEGFG
ELVGFCSAWGYWLCAVIANVSYLVIVFAALSFFTDSPQQTLFGDGNTWQAVIGESILLWVVHFMVLRGVKTAAGINLAAT
LAKLLPLGLFVILAAIAFRLDTFKIDFTGLKMGVPVWEQVKSTMLFTLWVFIGVEGAVVVSARARHKRDVGRATMLAVVS
ALVVYLLITLLSLGVVPRAELAEMRNPSMAGLMVKMIGPVGEIVIAGGLIISVCGAYLSWTIMAAEVPFLASQHGAFPKI
FGKQNAKEAPASSLWLTNGAVQVTLIIIWATGANYNNLLTIASEMILVPYFLVGAFLYKVAREKGDRWITLAAIGACAYG
LWLLYASGLTHLLMSVLLYAPGLLVFMHARRSQGDRQRMSVLERSGICLLLMATLPAGWFMLH
>Mature_463_residues
MEKKLGLTALTALVLSSMLGAGVFSLPQNMADVASPAALLIGWAITGVGILFLALAMLLLTRLRPDLDGGIFTYAKEGFG
ELVGFCSAWGYWLCAVIANVSYLVIVFAALSFFTDSPQQTLFGDGNTWQAVIGESILLWVVHFMVLRGVKTAAGINLAAT
LAKLLPLGLFVILAAIAFRLDTFKIDFTGLKMGVPVWEQVKSTMLFTLWVFIGVEGAVVVSARARHKRDVGRATMLAVVS
ALVVYLLITLLSLGVVPRAELAEMRNPSMAGLMVKMIGPVGEIVIAGGLIISVCGAYLSWTIMAAEVPFLASQHGAFPKI
FGKQNAKEAPASSLWLTNGAVQVTLIIIWATGANYNNLLTIASEMILVPYFLVGAFLYKVAREKGDRWITLAAIGACAYG
LWLLYASGLTHLLMSVLLYAPGLLVFMHARRSQGDRQRMSVLERSGICLLLMATLPAGWFMLH

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=462, Percent_Identity=74.4588744588745, Blast_Score=696, Evalue=0.0,
Organism=Escherichia coli, GI2367353, Length=339, Percent_Identity=29.7935103244838, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1786908, Length=430, Percent_Identity=28.1395348837209, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1790575, Length=463, Percent_Identity=23.7580993520518, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004754 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49850; Mature: 49850

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKLGLTALTALVLSSMLGAGVFSLPQNMADVASPAALLIGWAITGVGILFLALAMLLL
CCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
TRLRPDLDGGIFTYAKEGFGELVGFCSAWGYWLCAVIANVSYLVIVFAALSFFTDSPQQT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LFGDGNTWQAVIGESILLWVVHFMVLRGVKTAAGINLAATLAKLLPLGLFVILAAIAFRL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DTFKIDFTGLKMGVPVWEQVKSTMLFTLWVFIGVEGAVVVSARARHKRDVGRATMLAVVS
HHEEEEECCCEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
ALVVYLLITLLSLGVVPRAELAEMRNPSMAGLMVKMIGPVGEIVIAGGLIISVCGAYLSW
HHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TIMAAEVPFLASQHGAFPKIFGKQNAKEAPASSLWLTNGAVQVTLIIIWATGANYNNLLT
HHHHHHCCHHHHCCCCCCHHHCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCCHHHH
IASEMILVPYFLVGAFLYKVAREKGDRWITLAAIGACAYGLWLLYASGLTHLLMSVLLYA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLLVFMHARRSQGDRQRMSVLERSGICLLLMATLPAGWFMLH
CHHHHHHHHHHCCCHHHHHHHHHHCCHHEEHHHHCCCCCEECC
>Mature Secondary Structure
MEKKLGLTALTALVLSSMLGAGVFSLPQNMADVASPAALLIGWAITGVGILFLALAMLLL
CCCCHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
TRLRPDLDGGIFTYAKEGFGELVGFCSAWGYWLCAVIANVSYLVIVFAALSFFTDSPQQT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LFGDGNTWQAVIGESILLWVVHFMVLRGVKTAAGINLAATLAKLLPLGLFVILAAIAFRL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DTFKIDFTGLKMGVPVWEQVKSTMLFTLWVFIGVEGAVVVSARARHKRDVGRATMLAVVS
HHEEEEECCCEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
ALVVYLLITLLSLGVVPRAELAEMRNPSMAGLMVKMIGPVGEIVIAGGLIISVCGAYLSW
HHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
TIMAAEVPFLASQHGAFPKIFGKQNAKEAPASSLWLTNGAVQVTLIIIWATGANYNNLLT
HHHHHHCCHHHHCCCCCCHHHCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCCHHHH
IASEMILVPYFLVGAFLYKVAREKGDRWITLAAIGACAYGLWLLYASGLTHLLMSVLLYA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGLLVFMHARRSQGDRQRMSVLERSGICLLLMATLPAGWFMLH
CHHHHHHHHHHCCCHHHHHHHHHHCCHHEEHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]