| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is hmuT [H]
Identifier: 238919803
GI number: 238919803
Start: 1835671
End: 1836498
Strand: Reverse
Name: hmuT [H]
Synonym: NT01EI_1907
Alternate gene names: 238919803
Gene position: 1836498-1835671 (Counterclockwise)
Preceding gene: 238919804
Following gene: 238919802
Centisome position: 48.17
GC content: 67.39
Gene sequence:
>828_bases ATGGCTCGAATCACTCTGGCGATACTGCTGGCAGTGTGCAGCATCGGCGCCCGGGGCGGTGAACGGCTGATCACCATCGG CGGTGACGTGACGGAGATCGTGTTTGCCCTGGGGGCGGGCGATCAGGTTGTCGCCCGGGACAGCACCAGCACCCAGCCTG CCGCCGCCGCCGCACTGCCGGATGTAGGCTATATGCGCCAGCTCAACGCAGAGGGTATCCTCGCCCTGAAACCGACCCGG GTGCTCGCCAGCGATCAGGCCCAGCCGACCATCGCGCTGTCACAGATAAGTGAAGTGGGCGTCACCGTGGTACCGGTGGC CAGCGTCAACCGCCTGGAGGCCGTCAGCAATAAAATCCGCCGGCTGGCCAGCGCACTGGGGCGCGAAGCGCAGGGACAGG CGCTGATCGAGGACTACCAGCGACGTCTGGCCGCCATCCCGGGTTCCCCCCTCACTACCCGGGTGTTGTTTATCCTCAGC CACAGCGGCATGACACCGATGGCGGCCGGAGGCCAGACCGCCGCTGACGCCATCATCCGTGCAGCCGGGGGCAAGAACGC CATGCAGGGCTTTAACCGCTACCGGCCGCTCTCCCAGGAGGGGGTCATCGCCGCCCAGCCGGATCTGATCCTGATCAGCC GCGATGGCGCCAAGGCGCTGGGAAGTCCGGAGCGGGTATGGACGCTGCCCGGGATGGCGCAAACGCCGGCGGCGCGCGAA AAACGGGTACTGGTGCTTGACGACATGGTGCTGCTGGGCTTTACCCTCGGCACACCGGATGCGCTGGCCGCACTGCGTAG CGCGGCCGAACAGGCGCAGCGGCCATGA
Upstream 100 bases:
>100_bases TAGCCCAGCTGTTCGGGCAGCGTACCGAAGGCGAGACGGAACAGACACAGTGGCGCGAGCAGCTGGCGGCCGTGACATCG CTGACGCAGGAGCCGGCATA
Downstream 100 bases:
>100_bases TCCGCCGCTCTCCGCGTCTGACGCTGGCGTTGCTGTTGGGTCTATTGATGTTGATCACGCTGACCGCCGCCCACCTGGGC GCACTGCGCCTGTCGCCCGT
Product: hemin-binding periplasmic protein HmuT
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MARITLAILLAVCSIGARGGERLITIGGDVTEIVFALGAGDQVVARDSTSTQPAAAAALPDVGYMRQLNAEGILALKPTR VLASDQAQPTIALSQISEVGVTVVPVASVNRLEAVSNKIRRLASALGREAQGQALIEDYQRRLAAIPGSPLTTRVLFILS HSGMTPMAAGGQTAADAIIRAAGGKNAMQGFNRYRPLSQEGVIAAQPDLILISRDGAKALGSPERVWTLPGMAQTPAARE KRVLVLDDMVLLGFTLGTPDALAALRSAAEQAQRP
Sequences:
>Translated_275_residues MARITLAILLAVCSIGARGGERLITIGGDVTEIVFALGAGDQVVARDSTSTQPAAAAALPDVGYMRQLNAEGILALKPTR VLASDQAQPTIALSQISEVGVTVVPVASVNRLEAVSNKIRRLASALGREAQGQALIEDYQRRLAAIPGSPLTTRVLFILS HSGMTPMAAGGQTAADAIIRAAGGKNAMQGFNRYRPLSQEGVIAAQPDLILISRDGAKALGSPERVWTLPGMAQTPAARE KRVLVLDDMVLLGFTLGTPDALAALRSAAEQAQRP >Mature_274_residues ARITLAILLAVCSIGARGGERLITIGGDVTEIVFALGAGDQVVARDSTSTQPAAAAALPDVGYMRQLNAEGILALKPTRV LASDQAQPTIALSQISEVGVTVVPVASVNRLEAVSNKIRRLASALGREAQGQALIEDYQRRLAAIPGSPLTTRVLFILSH SGMTPMAAGGQTAADAIIRAAGGKNAMQGFNRYRPLSQEGVIAAQPDLILISRDGAKALGSPERVWTLPGMAQTPAAREK RVLVLDDMVLLGFTLGTPDALAALRSAAEQAQRP
Specific function: Part of the binding-protein-dependent transport system for hemin [H]
COG id: COG4558
COG function: function code P; ABC-type hemin transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002491 [H]
Pfam domain/function: PF01497 Peripla_BP_2 [H]
EC number: NA
Molecular weight: Translated: 28632; Mature: 28500
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARITLAILLAVCSIGARGGERLITIGGDVTEIVFALGAGDQVVARDSTSTQPAAAAALP CCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHCC DVGYMRQLNAEGILALKPTRVLASDQAQPTIALSQISEVGVTVVPVASVNRLEAVSNKIR CCHHHHHCCCCCEEEECCCHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH RLASALGREAQGQALIEDYQRRLAAIPGSPLTTRVLFILSHSGMTPMAAGGQTAADAIIR HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHHHHHH AAGGKNAMQGFNRYRPLSQEGVIAAQPDLILISRDGAKALGSPERVWTLPGMAQTPAARE HCCCCHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCHHCCCCCEEEECCCCCCCCCCCC KRVLVLDDMVLLGFTLGTPDALAALRSAAEQAQRP CEEEEEECHHHHHEECCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure ARITLAILLAVCSIGARGGERLITIGGDVTEIVFALGAGDQVVARDSTSTQPAAAAALP CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCEEEECCCCCCCCHHHHHCC DVGYMRQLNAEGILALKPTRVLASDQAQPTIALSQISEVGVTVVPVASVNRLEAVSNKIR CCHHHHHCCCCCEEEECCCHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH RLASALGREAQGQALIEDYQRRLAAIPGSPLTTRVLFILSHSGMTPMAAGGQTAADAIIR HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCCCCCCCHHHHHHHH AAGGKNAMQGFNRYRPLSQEGVIAAQPDLILISRDGAKALGSPERVWTLPGMAQTPAARE HCCCCHHHHHHHHCCCCCCCCEEEECCCEEEEECCCCHHCCCCCEEEECCCCCCCCCCCC KRVLVLDDMVLLGFTLGTPDALAALRSAAEQAQRP CEEEEEECHHHHHEECCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]