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The map label for this gene is ompS2 [H]

Identifier: 238919771

GI number: 238919771

Start: 1808033

End: 1809154

Strand: Reverse

Name: ompS2 [H]

Synonym: NT01EI_1875

Alternate gene names: 238919771

Gene position: 1809154-1808033 (Counterclockwise)

Preceding gene: 238919772

Following gene: 238919758

Centisome position: 47.46

GC content: 54.55

Gene sequence:

>1122_bases
GTGAAACGTAATCTGCTGGCAGCCGTTATTCCTGCTCTGTTAGTTGCAGGCGCAGCCAACGCTGCGGAAATCTACAACAA
AGACGGCAACAAGCTGGATCTGTACGGTAAAGTAGACGGTCTGCATTACTTCTCTCAAAATCATAGTGTGGATGGCGACC
AGTCCTACGTCCGTTTCGGCTTCAAAGGCGAAACCCAGATTAACGATCAGCTGACCGGTTATGGCCAGTGGGAAGCTCAG
GCTAACGTTAACCAGCCGGAAAGCAATTCATCTAACTTCTTCACCCGTCTGGGCTTTGCCGGCCTGAAGTACGGCAACTA
CGGCTCTATCGACTACGGCCGTAACTACGGCGTGCTGTACGACATCGAAGGCTGGACCGACGTGCTGCCGGAGTTCGGCG
GCGACACCTCTGCCCAGTCCGATAACTTTATGACCCAGCGCGCCAACAACTTGGCCACCTACCGTAACAACGGCTTCTTT
GGCCTGGTTGACGGTCTGAACCTCGCTCTGCAGTATCAGGGTAAAAACGATACCACTGGCGAAAGCAACAACGGCCGTGA
CAAGCTGACTAAGCAGAACGGCGATGGCTTCGGTCTGTCCACCACCTACGATCTGGGCTGGGGCATCAGCGCCGGTGCGG
CGTACACCACCTCTAACCGTACTACCGTTCAGAAGTGGCACGGCAACCAGTCTAACTCCAACGTTGCCGGCGGTAACAAA
GCCCAGTCCTGGGGTGCCGGCCTGAAGTATGATGCCAACAACATCTACCTGGCCACCATGTACACTGAAACCCAGAACAT
GACCCCGTTCGGCTCCACAGGTATCGCTAACAAGGCGAAGAACTTCGAAGCCGTGGCCCAGTATCAGTTTGACTTCGGTC
TGCGTCCGTCCATCGCCTACCTGCAGTCCAGGGCCTCTGAGCTGAACGCCTACAACGGCTTTAACGGTGGCAAGGCTGAC
CTGGTGAAATACGTTGACCTGGGCGCGACCTACTACTTCAACAAGAACATGTCCACCTACGTTGATTACAAGATCAACCT
GCTGGACAATAACGACTTCACCCGCGCGAACAGCATCAATACCGATGACATCGTTGCTCTGGGTCTGGTTTACCAGTTCT
AA

Upstream 100 bases:

>100_bases
GGAACGCAATTTAGTTCTCACTCGCAGCACCAAAAAACAAAATAAGCAGTGGCATCTCATACCTGACCGCACCGGTCAGC
AACTAAGAAGGAATATTATT

Downstream 100 bases:

>100_bases
TCCACGTCTGCGGATAGCATAAAGGGGCGCCAGGCCTGACGGCTCCCTATAAATAAAGACAGGCATAGAGGATTGTGATC
TACCCGTAAGGCCTCTCCTC

Product: outer membrane protein N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MKRNLLAAVIPALLVAGAANAAEIYNKDGNKLDLYGKVDGLHYFSQNHSVDGDQSYVRFGFKGETQINDQLTGYGQWEAQ
ANVNQPESNSSNFFTRLGFAGLKYGNYGSIDYGRNYGVLYDIEGWTDVLPEFGGDTSAQSDNFMTQRANNLATYRNNGFF
GLVDGLNLALQYQGKNDTTGESNNGRDKLTKQNGDGFGLSTTYDLGWGISAGAAYTTSNRTTVQKWHGNQSNSNVAGGNK
AQSWGAGLKYDANNIYLATMYTETQNMTPFGSTGIANKAKNFEAVAQYQFDFGLRPSIAYLQSRASELNAYNGFNGGKAD
LVKYVDLGATYYFNKNMSTYVDYKINLLDNNDFTRANSINTDDIVALGLVYQF

Sequences:

>Translated_373_residues
MKRNLLAAVIPALLVAGAANAAEIYNKDGNKLDLYGKVDGLHYFSQNHSVDGDQSYVRFGFKGETQINDQLTGYGQWEAQ
ANVNQPESNSSNFFTRLGFAGLKYGNYGSIDYGRNYGVLYDIEGWTDVLPEFGGDTSAQSDNFMTQRANNLATYRNNGFF
GLVDGLNLALQYQGKNDTTGESNNGRDKLTKQNGDGFGLSTTYDLGWGISAGAAYTTSNRTTVQKWHGNQSNSNVAGGNK
AQSWGAGLKYDANNIYLATMYTETQNMTPFGSTGIANKAKNFEAVAQYQFDFGLRPSIAYLQSRASELNAYNGFNGGKAD
LVKYVDLGATYYFNKNMSTYVDYKINLLDNNDFTRANSINTDDIVALGLVYQF
>Mature_373_residues
MKRNLLAAVIPALLVAGAANAAEIYNKDGNKLDLYGKVDGLHYFSQNHSVDGDQSYVRFGFKGETQINDQLTGYGQWEAQ
ANVNQPESNSSNFFTRLGFAGLKYGNYGSIDYGRNYGVLYDIEGWTDVLPEFGGDTSAQSDNFMTQRANNLATYRNNGFF
GLVDGLNLALQYQGKNDTTGESNNGRDKLTKQNGDGFGLSTTYDLGWGISAGAAYTTSNRTTVQKWHGNQSNSNVAGGNK
AQSWGAGLKYDANNIYLATMYTETQNMTPFGSTGIANKAKNFEAVAQYQFDFGLRPSIAYLQSRASELNAYNGFNGGKAD
LVKYVDLGATYYFNKNMSTYVDYKINLLDNNDFTRANSINTDDIVALGLVYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=362, Percent_Identity=67.1270718232044, Blast_Score=466, Evalue=1e-133,
Organism=Escherichia coli, GI1788544, Length=381, Percent_Identity=65.3543307086614, Blast_Score=458, Evalue=1e-130,
Organism=Escherichia coli, GI1786436, Length=374, Percent_Identity=59.0909090909091, Blast_Score=428, Evalue=1e-121,
Organism=Escherichia coli, GI1787160, Length=386, Percent_Identity=54.6632124352332, Blast_Score=373, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40954; Mature: 40954

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNLLAAVIPALLVAGAANAAEIYNKDGNKLDLYGKVDGLHYFSQNHSVDGDQSYVRFG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEEEE
FKGETQINDQLTGYGQWEAQANVNQPESNSSNFFTRLGFAGLKYGNYGSIDYGRNYGVLY
CCCCCEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEGWTDVLPEFGGDTSAQSDNFMTQRANNLATYRNNGFFGLVDGLNLALQYQGKNDTTG
ECCCHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEECCCCEEEECCCEEEEEECCCCCCCC
ESNNGRDKLTKQNGDGFGLSTTYDLGWGISAGAAYTTSNRTTVQKWHGNQSNSNVAGGNK
CCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCC
AQSWGAGLKYDANNIYLATMYTETQNMTPFGSTGIANKAKNFEAVAQYQFDFGLRPSIAY
CHHCCCCCEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
LQSRASELNAYNGFNGGKADLVKYVDLGATYYFNKNMSTYVDYKINLLDNNDFTRANSIN
HHHHHHHHHCCCCCCCCHHHHEEEEECCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCC
TDDIVALGLVYQF
CCCEEEEEEEECC
>Mature Secondary Structure
MKRNLLAAVIPALLVAGAANAAEIYNKDGNKLDLYGKVDGLHYFSQNHSVDGDQSYVRFG
CCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEEEE
FKGETQINDQLTGYGQWEAQANVNQPESNSSNFFTRLGFAGLKYGNYGSIDYGRNYGVLY
CCCCCEECCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEE
DIEGWTDVLPEFGGDTSAQSDNFMTQRANNLATYRNNGFFGLVDGLNLALQYQGKNDTTG
ECCCHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEECCCCEEEECCCEEEEEECCCCCCCC
ESNNGRDKLTKQNGDGFGLSTTYDLGWGISAGAAYTTSNRTTVQKWHGNQSNSNVAGGNK
CCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCC
AQSWGAGLKYDANNIYLATMYTETQNMTPFGSTGIANKAKNFEAVAQYQFDFGLRPSIAY
CHHCCCCCEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
LQSRASELNAYNGFNGGKADLVKYVDLGATYYFNKNMSTYVDYKINLLDNNDFTRANSIN
HHHHHHHHHCCCCCCCCHHHHEEEEECCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCC
TDDIVALGLVYQF
CCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]