Click here to switch to the map view.

The map label for this gene is phsB [H]

Identifier: 238919751

GI number: 238919751

Start: 1792025

End: 1792597

Strand: Direct

Name: phsB [H]

Synonym: NT01EI_1855

Alternate gene names: 238919751

Gene position: 1792025-1792597 (Clockwise)

Preceding gene: 238919750

Following gene: 238919752

Centisome position: 47.01

GC content: 62.83

Gene sequence:

>573_bases
ATGAATCAGAACAACAACCACTATGTCATGCTACATGACGAGAAACGCTGCATTGGCTGCCAGGCCTGTACCGTCGCCTG
CCGGGTGCTGAACGATGTGCCTGTGGCGTACAGTCGGCTGCAGGTGCAGATCCATCTGCCGGAGCAGGAGACGGAGGGGC
GCTTTCGCTTTGTCAGGATTTCATGCCAGCACTGCGCCGATGCGCCCTGCGTCAGCGTGTGTCCGACCGGCGCCTCTTTC
CGGGATGATAACGGGATCGTGCAGGTCGATAAGTCCCGCTGCATCGGCTGTGACTACTGCGTCGCCGCCTGCCCTTTCCA
CGTGCGCTATCTGGATCCGCGCAGCGGCGTCGCGGATCAGTGCAACTTCTGCAGCGACAGCCGCCTGTCGGAGGGGCTGG
CGCCCGCCTGTGTCTCGGTCTGCCCGACCGATGCGCTGCACTTCGGTCGCCTGGAGTCGGCGGAGGTGCAGCGCTGGATT
GGCCAAGAGGAGGTCTATCGCCAGCGTGATGCGCGCAGCGGAGAGGTCAGCCTGTATCGCCGTAAAGAGATCCACCGGGA
GGAGCAATCATGA

Upstream 100 bases:

>100_bases
TCCACTGCGGCAATCTGCTGCCCCATGCAACCAGCCCGGTGTCCGGCACCGTGGTCCACACCGCCGGGGTTACCCTGCGC
CGCGCCTGAAGGAGCCGTCG

Downstream 100 bases:

>100_bases
ACAGCATTTGGGGTGCGGAGTTACACTACACACCGGACTACTGGCCACAGTGGCTGGCGCTGGCGGCGGCGCTGGTCGCC
ACGCTGCTGGCCGGGCTGGC

Product: 4Fe-4S binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MNQNNNHYVMLHDEKRCIGCQACTVACRVLNDVPVAYSRLQVQIHLPEQETEGRFRFVRISCQHCADAPCVSVCPTGASF
RDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSGVADQCNFCSDSRLSEGLAPACVSVCPTDALHFGRLESAEVQRWI
GQEEVYRQRDARSGEVSLYRRKEIHREEQS

Sequences:

>Translated_190_residues
MNQNNNHYVMLHDEKRCIGCQACTVACRVLNDVPVAYSRLQVQIHLPEQETEGRFRFVRISCQHCADAPCVSVCPTGASF
RDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSGVADQCNFCSDSRLSEGLAPACVSVCPTDALHFGRLESAEVQRWI
GQEEVYRQRDARSGEVSLYRRKEIHREEQS
>Mature_190_residues
MNQNNNHYVMLHDEKRCIGCQACTVACRVLNDVPVAYSRLQVQIHLPEQETEGRFRFVRISCQHCADAPCVSVCPTGASF
RDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSGVADQCNFCSDSRLSEGLAPACVSVCPTDALHFGRLESAEVQRWI
GQEEVYRQRDARSGEVSLYRRKEIHREEQS

Specific function: Electron transport protein for the PHS system oxidoreductase which produces hydrogen sulfide from thiosulfate (Potential) [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI226510944, Length=180, Percent_Identity=52.7777777777778, Blast_Score=202, Evalue=9e-54,
Organism=Escherichia coli, GI2367345, Length=184, Percent_Identity=48.3695652173913, Blast_Score=176, Evalue=9e-46,
Organism=Escherichia coli, GI1790326, Length=163, Percent_Identity=36.8098159509202, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787749, Length=166, Percent_Identity=37.9518072289157, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1787872, Length=156, Percent_Identity=36.5384615384615, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1789370, Length=202, Percent_Identity=32.6732673267327, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1787122, Length=156, Percent_Identity=35.8974358974359, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI87082180, Length=165, Percent_Identity=35.7575757575758, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI87082179, Length=176, Percent_Identity=34.6590909090909, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789067, Length=156, Percent_Identity=37.1794871794872, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788811, Length=152, Percent_Identity=34.2105263157895, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI2367245, Length=158, Percent_Identity=32.9113924050633, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787963, Length=156, Percent_Identity=27.5641025641026, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789079, Length=212, Percent_Identity=27.3584905660377, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1787740, Length=110, Percent_Identity=30.9090909090909, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787478, Length=91, Percent_Identity=34.0659340659341, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 21460; Mature: 21460

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
8.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
9.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQNNNHYVMLHDEKRCIGCQACTVACRVLNDVPVAYSRLQVQIHLPEQETEGRFRFVRI
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEE
SCQHCADAPCVSVCPTGASFRDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSGVADQ
EECCCCCCCCEEECCCCCCEECCCCEEEECCCCCCCCHHHHHHCCEEEEEECCCCCCCCC
CNFCSDSRLSEGLAPACVSVCPTDALHFGRLESAEVQRWIGQEEVYRQRDARSGEVSLYR
CCCCCCCHHHCCCCHHHHHHCCCCCHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCEEHHH
RKEIHREEQS
HHHHHHHCCC
>Mature Secondary Structure
MNQNNNHYVMLHDEKRCIGCQACTVACRVLNDVPVAYSRLQVQIHLPEQETEGRFRFVRI
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCEEEEEE
SCQHCADAPCVSVCPTGASFRDDNGIVQVDKSRCIGCDYCVAACPFHVRYLDPRSGVADQ
EECCCCCCCCEEECCCCCCEECCCCEEEECCCCCCCCHHHHHHCCEEEEEECCCCCCCCC
CNFCSDSRLSEGLAPACVSVCPTDALHFGRLESAEVQRWIGQEEVYRQRDARSGEVSLYR
CCCCCCCHHHCCCCHHHHHHCCCCCHHCCCCCHHHHHHHCCHHHHHHHHCCCCCCEEHHH
RKEIHREEQS
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]