| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is phsA [H]
Identifier: 238919750
GI number: 238919750
Start: 1789737
End: 1792013
Strand: Direct
Name: phsA [H]
Synonym: NT01EI_1854
Alternate gene names: 238919750
Gene position: 1789737-1792013 (Clockwise)
Preceding gene: 238919749
Following gene: 238919751
Centisome position: 46.95
GC content: 63.11
Gene sequence:
>2277_bases ATGAGTATCAGTCGTCGTTATTTTCTTAAAGGCATTGGAGTCGGTTGTAGTGGATGTGCCCTCAGCAGTTTTCCGCCTGG GGCGCTGGCGTTGAATCGACCCGATGAAATAAAAGGTAAGGCCAGGCTGACGCCCAGTCTGTGTGAGATGTGCTCTTTCC GCTGCCCGATACAGGCGCAGGTGGTGAATAATAAAACGGTGTTTATCCAGGGTAATCCGCAGGCGGCGCATCAGGGCACC CGGATCTGCGCCCGCGGCGGCAGCGGGGTGAGCCTGGTGAACGATCCGCAGCGTATCGTCAGGCCGATGAAGCGCCGCGG CCCACGCGGCGCCGGGGAGTGGCAGACGATCAGTTGGCAGCAGGCCTACCGTGAGATCGCTGAAAAGATGAATGCCATCA AGGCGCAGCACGGCGCGCAAAGCCTGGCCTTTTCCTCCAAGTCCGGATCCCTCTCAGGGCACCTGTTCCATTTGGCCTCC GCCTATGGCTCTCCGAATACCTTCACCCATGCCTCGACCTGTCCGGCGGGTAAGTCGATCGCCGCCAAGGTGATGATGGG CGGCGATCTGGCGATGGACATCGTCAATACCCGCTATATGGTGGCTTTCGGTCATAATCTGTATGAGGGGATCGAGGTTG CTGATACGCATGAAATGATGATGGCGCAGGAGCGGGGCGCCAAGGTGGTCAGCTTCGATCCGCGGCTGTCGGTCTTCTCC AGCAAGGCCGATGAATGGCATGCGATCCGCCCCGGCGGCGACCTGCCGGTGCTGATGGCGATGTGTCACGTGATGATCGC CGAGCGCCTGTACGATGCGGCCTTTGTCGATCGCTATACCCTGGGATTCGATCGGCTGGCGGAGGCCGTCAGTGAGACTA CGCCGACGTGGGCGCAGCAACATGCTGATATCCCGGCGCAGGTCATCGTACGGGTAACCCGTGAGCTGGCTGCCAGTGCG CCCCACGCCATTGTCAATCCGGGCCACCGTGCGACCTATTCGCAGGAAGAGGTCGATATGCGGCGGATGATCTTCACCCT GAATGCCCTGCTGGGTAACGTGGAGCGTCAGGGGGGGCTGTATCAGAAGAAGGGGGCCTCCGTCTATAACACGCTGGCCG GTGAGACGGTGGCGCCGACGCTGGCCAAACCCGGCGTAAAGGGGATGCCATCCATCCAGGCGCCGCGCATTGACGCAACG GCGCCGCAGTTTACCTATATCACCGCCAGCGGCGGCGTGGTGCAAAGCATTATCGATGCCGCGCTGACGCAGACGCCTTA TCCGCTGAAGGGGTGGATTATGTCGCGTCATAATCCGTTTCAGACCGTCACCTGTCGGCCCGACCTGGTCAAAACCGTCG AGAGGCTGGAGCTGGTGGTGAGCTGCGATGTGTATCTGAGCGAAAGCGCCGCCTATGCCGACTATCTGCTGCCGGAGTGC ACCTATCTGGAGCGCGATGAGGAGGTCAGCGATGTGTCCGGCCTCAACCCAGCCTATGCGTTGCGTCAGCAGGTGGTGGA GACCATCGGCGAAGCGCGGCCCAGCTGGCAGATCTGGAAGGAGCTGGGGGAGGCGCTGGGGCTGGGCCAGTACTACCCCT GGGAGACGATGGCGACGCGCCAGCTGTTTCAGCTGGGTGGCGATCGGGCGCTGTACGGCGCGCTGCGCGAAAAGGGATAT CTCAGCTGGGGGGTGCCGCTGCTGCTGCGCGAGCCGGCTTCGGTTGAGCGGTTTGTCGAGCGCTACCCTCAGGCGGCGCA GCGGGATAGCGACGGCACGCTGGGCGGGGCCCTGCGCTTTAAGTCGCCAAGCGGACGTATCGAGCTCTATTCGGCGGCGC TGGAGGCGCTCTTGCCGGGATATGGCGCCCCGCGCTTTCGCAACCTGCCCCTTAAGCAGCCGGATCAGCTCTATTTCATT CAGGGTAAGGTGGCGGTGCACACCAACGGTGCGACGCAGTATGTGCCGCTGTTGAGCGAGCTGATGTGGGACAACGCAGT GTGGGTGCATCCCCAGACGGCACAGGCGCGCGGTATCCGCAGCGGCGATACGGTGTGGCTGGAGAACCCGACCGGCCGGG AGAAGGGACGGGCGCTGGTGACGCTGGCGATCCGCCCCGATACCCTGTTTGTCTATATGGGGTTTGGCGCCAAGGCCGGT GCCCGTACGACGGCCAGCCGCCACGGGATCCACTGCGGCAATCTGCTGCCCCATGCAACCAGCCCGGTGTCCGGCACCGT GGTCCACACCGCCGGGGTTACCCTGCGCCGCGCCTGA
Upstream 100 bases:
>100_bases CGGTAAAATATTTTACCGCGTGCTGCTGATTTGCTGATGAGCTCAAGTAATGAAGATGTTTTCTCCCTATAATCATTTTG TATAATAAAAAGGAGATTAT
Downstream 100 bases:
>100_bases AGGAGCCGTCGATGAATCAGAACAACAACCACTATGTCATGCTACATGACGAGAAACGCTGCATTGGCTGCCAGGCCTGT ACCGTCGCCTGCCGGGTGCT
Product: thiosulfate reductase
Products: Reduced form of N-Oxide compounds [C]
Alternate protein names: NA
Number of amino acids: Translated: 758; Mature: 757
Protein sequence:
>758_residues MSISRRYFLKGIGVGCSGCALSSFPPGALALNRPDEIKGKARLTPSLCEMCSFRCPIQAQVVNNKTVFIQGNPQAAHQGT RICARGGSGVSLVNDPQRIVRPMKRRGPRGAGEWQTISWQQAYREIAEKMNAIKAQHGAQSLAFSSKSGSLSGHLFHLAS AYGSPNTFTHASTCPAGKSIAAKVMMGGDLAMDIVNTRYMVAFGHNLYEGIEVADTHEMMMAQERGAKVVSFDPRLSVFS SKADEWHAIRPGGDLPVLMAMCHVMIAERLYDAAFVDRYTLGFDRLAEAVSETTPTWAQQHADIPAQVIVRVTRELAASA PHAIVNPGHRATYSQEEVDMRRMIFTLNALLGNVERQGGLYQKKGASVYNTLAGETVAPTLAKPGVKGMPSIQAPRIDAT APQFTYITASGGVVQSIIDAALTQTPYPLKGWIMSRHNPFQTVTCRPDLVKTVERLELVVSCDVYLSESAAYADYLLPEC TYLERDEEVSDVSGLNPAYALRQQVVETIGEARPSWQIWKELGEALGLGQYYPWETMATRQLFQLGGDRALYGALREKGY LSWGVPLLLREPASVERFVERYPQAAQRDSDGTLGGALRFKSPSGRIELYSAALEALLPGYGAPRFRNLPLKQPDQLYFI QGKVAVHTNGATQYVPLLSELMWDNAVWVHPQTAQARGIRSGDTVWLENPTGREKGRALVTLAIRPDTLFVYMGFGAKAG ARTTASRHGIHCGNLLPHATSPVSGTVVHTAGVTLRRA
Sequences:
>Translated_758_residues MSISRRYFLKGIGVGCSGCALSSFPPGALALNRPDEIKGKARLTPSLCEMCSFRCPIQAQVVNNKTVFIQGNPQAAHQGT RICARGGSGVSLVNDPQRIVRPMKRRGPRGAGEWQTISWQQAYREIAEKMNAIKAQHGAQSLAFSSKSGSLSGHLFHLAS AYGSPNTFTHASTCPAGKSIAAKVMMGGDLAMDIVNTRYMVAFGHNLYEGIEVADTHEMMMAQERGAKVVSFDPRLSVFS SKADEWHAIRPGGDLPVLMAMCHVMIAERLYDAAFVDRYTLGFDRLAEAVSETTPTWAQQHADIPAQVIVRVTRELAASA PHAIVNPGHRATYSQEEVDMRRMIFTLNALLGNVERQGGLYQKKGASVYNTLAGETVAPTLAKPGVKGMPSIQAPRIDAT APQFTYITASGGVVQSIIDAALTQTPYPLKGWIMSRHNPFQTVTCRPDLVKTVERLELVVSCDVYLSESAAYADYLLPEC TYLERDEEVSDVSGLNPAYALRQQVVETIGEARPSWQIWKELGEALGLGQYYPWETMATRQLFQLGGDRALYGALREKGY LSWGVPLLLREPASVERFVERYPQAAQRDSDGTLGGALRFKSPSGRIELYSAALEALLPGYGAPRFRNLPLKQPDQLYFI QGKVAVHTNGATQYVPLLSELMWDNAVWVHPQTAQARGIRSGDTVWLENPTGREKGRALVTLAIRPDTLFVYMGFGAKAG ARTTASRHGIHCGNLLPHATSPVSGTVVHTAGVTLRRA >Mature_757_residues SISRRYFLKGIGVGCSGCALSSFPPGALALNRPDEIKGKARLTPSLCEMCSFRCPIQAQVVNNKTVFIQGNPQAAHQGTR ICARGGSGVSLVNDPQRIVRPMKRRGPRGAGEWQTISWQQAYREIAEKMNAIKAQHGAQSLAFSSKSGSLSGHLFHLASA YGSPNTFTHASTCPAGKSIAAKVMMGGDLAMDIVNTRYMVAFGHNLYEGIEVADTHEMMMAQERGAKVVSFDPRLSVFSS KADEWHAIRPGGDLPVLMAMCHVMIAERLYDAAFVDRYTLGFDRLAEAVSETTPTWAQQHADIPAQVIVRVTRELAASAP HAIVNPGHRATYSQEEVDMRRMIFTLNALLGNVERQGGLYQKKGASVYNTLAGETVAPTLAKPGVKGMPSIQAPRIDATA PQFTYITASGGVVQSIIDAALTQTPYPLKGWIMSRHNPFQTVTCRPDLVKTVERLELVVSCDVYLSESAAYADYLLPECT YLERDEEVSDVSGLNPAYALRQQVVETIGEARPSWQIWKELGEALGLGQYYPWETMATRQLFQLGGDRALYGALREKGYL SWGVPLLLREPASVERFVERYPQAAQRDSDGTLGGALRFKSPSGRIELYSAALEALLPGYGAPRFRNLPLKQPDQLYFIQ GKVAVHTNGATQYVPLLSELMWDNAVWVHPQTAQARGIRSGDTVWLENPTGREKGRALVTLAIRPDTLFVYMGFGAKAGA RTTASRHGIHCGNLLPHATSPVSGTVVHTAGVTLRRA
Specific function: Oxidoreductase which produces hydrogen sulfide from thiosulfate (Potential) [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081797, Length=801, Percent_Identity=26.9662921348315, Blast_Score=189, Evalue=6e-49, Organism=Escherichia coli, GI171474008, Length=832, Percent_Identity=25.7211538461538, Blast_Score=184, Evalue=2e-47, Organism=Escherichia coli, GI1787870, Length=840, Percent_Identity=26.6666666666667, Blast_Score=182, Evalue=5e-47, Organism=Escherichia coli, GI3868721, Length=740, Percent_Identity=24.3243243243243, Blast_Score=139, Evalue=5e-34, Organism=Escherichia coli, GI1787231, Length=696, Percent_Identity=22.9885057471264, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI87081994, Length=804, Percent_Identity=22.636815920398, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI3868720, Length=309, Percent_Identity=25.5663430420712, Blast_Score=80, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 82751; Mature: 82619
Theoretical pI: Translated: 8.98; Mature: 8.98
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1 ; PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISRRYFLKGIGVGCSGCALSSFPPGALALNRPDEIKGKARLTPSLCEMCSFRCPIQAQ CCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCHHHHHHHCCCCCEEEE VVNNKTVFIQGNPQAAHQGTRICARGGSGVSLVNDPQRIVRPMKRRGPRGAGEWQTISWQ EECCEEEEEECCCHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECHH QAYREIAEKMNAIKAQHGAQSLAFSSKSGSLSGHLFHLASAYGSPNTFTHASTCPAGKSI HHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH AAKVMMGGDLAMDIVNTRYMVAFGHNLYEGIEVADTHEMMMAQERGAKVVSFDPRLSVFS HHHEEECCCHHHHHHCCEEEEEECCHHHCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHH SKADEWHAIRPGGDLPVLMAMCHVMIAERLYDAAFVDRYTLGFDRLAEAVSETTPTWAQQ CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHH HADIPAQVIVRVTRELAASAPHAIVNPGHRATYSQEEVDMRRMIFTLNALLGNVERQGGL HCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC YQKKGASVYNTLAGETVAPTLAKPGVKGMPSIQAPRIDATAPQFTYITASGGVVQSIIDA CHHCCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH ALTQTPYPLKGWIMSRHNPFQTVTCRPDLVKTVERLELVVSCDVYLSESAAYADYLLPEC HHHCCCCCHHHHEECCCCCCEEEECCHHHHHHHHHHHEEEEECEEECCCHHHHHHHCCCC TYLERDEEVSDVSGLNPAYALRQQVVETIGEARPSWQIWKELGEALGLGQYYPWETMATR CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH QLFQLGGDRALYGALREKGYLSWGVPLLLREPASVERFVERYPQAAQRDSDGTLGGALRF HHHHCCCCHHHHHHHHHCCCEECCCCEEEECCHHHHHHHHHCCHHHCCCCCCCCCCEEEE KSPSGRIELYSAALEALLPGYGAPRFRNLPLKQPDQLYFIQGKVAVHTNGATQYVPLLSE CCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHH LMWDNAVWVHPQTAQARGIRSGDTVWLENPTGREKGRALVTLAIRPDTLFVYMGFGAKAG HHHCCEEEECCCCHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCCCC ARTTASRHGIHCGNLLPHATSPVSGTVVHTAGVTLRRA CCCCHHHCCCCCCCCCCCCCCCCCCEEEEECCEEEECC >Mature Secondary Structure SISRRYFLKGIGVGCSGCALSSFPPGALALNRPDEIKGKARLTPSLCEMCSFRCPIQAQ CCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCCHHCCCCCCCCHHHHHHHCCCCCEEEE VVNNKTVFIQGNPQAAHQGTRICARGGSGVSLVNDPQRIVRPMKRRGPRGAGEWQTISWQ EECCEEEEEECCCHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECHH QAYREIAEKMNAIKAQHGAQSLAFSSKSGSLSGHLFHLASAYGSPNTFTHASTCPAGKSI HHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH AAKVMMGGDLAMDIVNTRYMVAFGHNLYEGIEVADTHEMMMAQERGAKVVSFDPRLSVFS HHHEEECCCHHHHHHCCEEEEEECCHHHCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHH SKADEWHAIRPGGDLPVLMAMCHVMIAERLYDAAFVDRYTLGFDRLAEAVSETTPTWAQQ CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHH HADIPAQVIVRVTRELAASAPHAIVNPGHRATYSQEEVDMRRMIFTLNALLGNVERQGGL HCCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC YQKKGASVYNTLAGETVAPTLAKPGVKGMPSIQAPRIDATAPQFTYITASGGVVQSIIDA CHHCCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH ALTQTPYPLKGWIMSRHNPFQTVTCRPDLVKTVERLELVVSCDVYLSESAAYADYLLPEC HHHCCCCCHHHHEECCCCCCEEEECCHHHHHHHHHHHEEEEECEEECCCHHHHHHHCCCC TYLERDEEVSDVSGLNPAYALRQQVVETIGEARPSWQIWKELGEALGLGQYYPWETMATR CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH QLFQLGGDRALYGALREKGYLSWGVPLLLREPASVERFVERYPQAAQRDSDGTLGGALRF HHHHCCCCHHHHHHHHHCCCEECCCCEEEECCHHHHHHHHHCCHHHCCCCCCCCCCEEEE KSPSGRIELYSAALEALLPGYGAPRFRNLPLKQPDQLYFIQGKVAVHTNGATQYVPLLSE CCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHH LMWDNAVWVHPQTAQARGIRSGDTVWLENPTGREKGRALVTLAIRPDTLFVYMGFGAKAG HHHCCEEEECCCCHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCEEEEEECCCCCCC ARTTASRHGIHCGNLLPHATSPVSGTVVHTAGVTLRRA CCCCHHHCCCCCCCCCCCCCCCCCCEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751291; 11677609; 7737516 [H]