Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

Click here to switch to the map view.

The map label for this gene is 238919666

Identifier: 238919666

GI number: 238919666

Start: 1715139

End: 1716014

Strand: Direct

Name: 238919666

Synonym: NT01EI_1767

Alternate gene names: NA

Gene position: 1715139-1716014 (Clockwise)

Preceding gene: 238919665

Following gene: 238919668

Centisome position: 44.99

GC content: 49.89

Gene sequence:

>876_bases
TTGGGATCGAAGCGTCCGTCCACCGGGGCATTTTACTGGCAGCGTGAGTTTGAGAAACTGGGGCACAAAGTAAAGGTCAT
CAGTCCTCAGTATGTAAAACCCTTTGTCCGCGGGCAAAAAAATGATGGTAATGATGCACAGGCCATCGCAGTGGCTCTGA
TGCAACCGACAATGCAGTTCGTGCCGCCAAAAAGCCCCGAACAGCAGGATATCCAGGCTTTACACCGGGCAAGGCAGCGT
ATTGTCAATCACCGCACTACTACAGTCTGTCAAATAAGAGGGCTGTTACTTGACCGGGGGATCCCCATTGGCAGTGCTGT
CTCCAGAGCTCGCCGGGCTATTCCTCTTATCCTTGAAGATGCAGAAAACGGTCTACGTTCCCGTATGCGCAGAACAATTG
CCGAGCTCTATGATCTCTTTAACGATCTCGAGCGTCGGATCCATTTTTTTGATAAGGAAATTGAAACAGTATTCAGGCAA
TCAGAAGCCTGTCAGCGTATCGCCAGAGTTAAAGGCATTGGCCCTAAAACGGCCACGGCCGTTGTTGCTGCTATTGGCAA
AGGAACTGAATTTAAGAATGGCCGCCACTTTGCTGCATGGCTGGGTCTGGTTCCACGCCAGCATTCGAGTGGCGACAGGC
AGGTGCTGATGAATATGACGAAAAAAGGCGACAAGCATCTGCGGACTCTTTTTATTCATGGTGCCCGCGCTGTCGTCAGG
GTTGCCACGAATAACAATGATGGTCATATGAATCAGTGGGTTAATCAGTTAAAGGAACGGTGCGGATTTAATAAAACGAC
CGTGGCGGTCGCTAACAAAAACGCGCGAATAATCTGGTCGATGCTGAGAAATGAGACCGAGTATCAGGTAGTGTGA

Upstream 100 bases:

>100_bases
CAACTCTGCGGGTTAAACCAGGCCGGCAAACCGGTTTATACGAAACGAACTGGCCGAAAAGAATTGCTCCAGACGCTGGC
AAATATTCCTGCATGTCTGA

Downstream 100 bases:

>100_bases
AATTAATCCCCTGCCAGAAAAAGTTGCAGCGTACTGAGAAATGGTGACAGGTTGCACCTGCACAATCGGAACCTGATTTT
TATACTGGCCTCAGAGGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQR
IVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQ
SEACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR
VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV

Sequences:

>Translated_291_residues
MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQR
IVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQ
SEACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR
VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV
>Mature_290_residues
GSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRI
VNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQS
EACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRV
ATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV

Specific function: Required for the transposition of an insertion element (Potential) [H]

COG id: COG3547

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 20 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR003346
- InterPro:   IPR002525 [H]

Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]

EC number: NA

Molecular weight: Translated: 33074; Mature: 32942

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQF
CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VPPKSPEQQDIQALHRARQRIVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILED
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH
AENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIGPKTATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR
HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEE
VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV
EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQF
CCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
VPPKSPEQQDIQALHRARQRIVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILED
CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH
AENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIGPKTATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
VVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR
HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEE
VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV
EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]