| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919660
Identifier: 238919660
GI number: 238919660
Start: 1709239
End: 1709922
Strand: Reverse
Name: 238919660
Synonym: NT01EI_1761
Alternate gene names: NA
Gene position: 1709922-1709239 (Counterclockwise)
Preceding gene: 238919661
Following gene: 238919659
Centisome position: 44.85
GC content: 52.05
Gene sequence:
>684_bases ATGAAACGTTCTTTTATTAACCAGAAAATTGATGAGGCGCACGCGTTCGCCAGACGCTTTCACCTCGCCCTGCCGGAATT CGCCCACTTTACGTTGGATGATTGGAAGCAAAAAGATTTTGCCCACTGGCAGGAAGTTATCGACCTGCAACTGGGCTGGG ACCTGACCGACTTCGGCGGCGGCAACTTTGCCGCGATGGGATTGGGCCTGTTCACCTTACGTAACGGTTCACTGACCGAC AGGCGCTACCCTAAAAGTTACGCGGAGAAAATGTTGCTCGTCGACGTACAGCAAGAGACACCGTTCCATTTTCATTTCTC CAAGAGGGAAGACATCCTCAACCGCGGCGGCGGAAATTTATGCATGCAGATTTACCATGCGACTCACGATGAACAACTCG ATACCCAACGACCGGTCGAGATTGCCGTTGACGGCTGCCTCCATATCTTAGCGCCGGGAGAAAAACTGCTCCTGAAGCCG GGCCAGGGCGTCTGCATCCCGCCTTACACCTATCACCGCTTTTGGGCGGAAAAAGCGTCGGTTCTGGGCTGGGAAGTCTC TATGGTCAACGACGATCACACCGACAACCGTTTCCTGGTTCCGCTTTCCCGCTTTGCCGAAATTGAAGAAGATGAACCGG TGAAATGGGTTCTTTGCAATGAATATCAATTGATTAAGGGATAA
Upstream 100 bases:
>100_bases TCACGCCATCACGCACCGACAGCTGTGAATCTCTCGGCCCATGAAACGCTGACGCTGAGTTACCAAATTCGCTGTACCGC AATTGATTGAGGAACCTGCC
Downstream 100 bases:
>100_bases GTAATGAGTTTGATAAATCTGGCCAAGATGCTGAAAACCGCTAAAAAAGAACATTTTGCTGTTGGTGCGTTCAATGCCAT CGATAATCACTTCGTCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 227; Mature: 227
Protein sequence:
>227_residues MKRSFINQKIDEAHAFARRFHLALPEFAHFTLDDWKQKDFAHWQEVIDLQLGWDLTDFGGGNFAAMGLGLFTLRNGSLTD RRYPKSYAEKMLLVDVQQETPFHFHFSKREDILNRGGGNLCMQIYHATHDEQLDTQRPVEIAVDGCLHILAPGEKLLLKP GQGVCIPPYTYHRFWAEKASVLGWEVSMVNDDHTDNRFLVPLSRFAEIEEDEPVKWVLCNEYQLIKG
Sequences:
>Translated_227_residues MKRSFINQKIDEAHAFARRFHLALPEFAHFTLDDWKQKDFAHWQEVIDLQLGWDLTDFGGGNFAAMGLGLFTLRNGSLTD RRYPKSYAEKMLLVDVQQETPFHFHFSKREDILNRGGGNLCMQIYHATHDEQLDTQRPVEIAVDGCLHILAPGEKLLLKP GQGVCIPPYTYHRFWAEKASVLGWEVSMVNDDHTDNRFLVPLSRFAEIEEDEPVKWVLCNEYQLIKG >Mature_227_residues MKRSFINQKIDEAHAFARRFHLALPEFAHFTLDDWKQKDFAHWQEVIDLQLGWDLTDFGGGNFAAMGLGLFTLRNGSLTD RRYPKSYAEKMLLVDVQQETPFHFHFSKREDILNRGGGNLCMQIYHATHDEQLDTQRPVEIAVDGCLHILAPGEKLLLKP GQGVCIPPYTYHRFWAEKASVLGWEVSMVNDDHTDNRFLVPLSRFAEIEEDEPVKWVLCNEYQLIKG
Specific function: Unknown
COG id: COG3822
COG function: function code R; ABC-type sugar transport system, auxiliary component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26276; Mature: 26276
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRSFINQKIDEAHAFARRFHLALPEFAHFTLDDWKQKDFAHWQEVIDLQLGWDLTDFGG CCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC GNFAAMGLGLFTLRNGSLTDRRYPKSYAEKMLLVDVQQETPFHFHFSKREDILNRGGGNL CCEEHHEEEEEEEECCCCCCCCCCHHHHCEEEEEEECCCCCEEEEECCHHHHHHCCCCCE CMQIYHATHDEQLDTQRPVEIAVDGCLHILAPGEKLLLKPGQGVCIPPYTYHRFWAEKAS EEEEEECCCCCCCCCCCCCEEEECCEEEEECCCCEEEEECCCCEEECCHHHHHHHHHHHH VLGWEVSMVNDDHTDNRFLVPLSRFAEIEEDEPVKWVLCNEYQLIKG HEEEEEEEECCCCCCCEEEEEHHHHHCCCCCCCEEEEEECCEEECCC >Mature Secondary Structure MKRSFINQKIDEAHAFARRFHLALPEFAHFTLDDWKQKDFAHWQEVIDLQLGWDLTDFGG CCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCC GNFAAMGLGLFTLRNGSLTDRRYPKSYAEKMLLVDVQQETPFHFHFSKREDILNRGGGNL CCEEHHEEEEEEEECCCCCCCCCCHHHHCEEEEEEECCCCCEEEEECCHHHHHHCCCCCE CMQIYHATHDEQLDTQRPVEIAVDGCLHILAPGEKLLLKPGQGVCIPPYTYHRFWAEKAS EEEEEECCCCCCCCCCCCCEEEECCEEEEECCCCEEEEECCCCEEECCHHHHHHHHHHHH VLGWEVSMVNDDHTDNRFLVPLSRFAEIEEDEPVKWVLCNEYQLIKG HEEEEEEEECCCCCCCEEEEEHHHHHCCCCCCCEEEEEECCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA