Click here to switch to the map view.

The map label for this gene is fucR [H]

Identifier: 238919654

GI number: 238919654

Start: 1704406

End: 1705158

Strand: Direct

Name: fucR [H]

Synonym: NT01EI_1755

Alternate gene names: 238919654

Gene position: 1704406-1705158 (Clockwise)

Preceding gene: 238919653

Following gene: 238919655

Centisome position: 44.71

GC content: 50.73

Gene sequence:

>753_bases
GTGAAAAATCATATTCGTCGTCAGCAGATCGTGAATGCAGTCAATCAGGTGCGTTCGGTGACGGTTGGGCAACTGGCCAA
TCAATTTCACATATCCGTGGAAACCGTACGCCGTGATCTGGCCTGGCTGGAAAAAATGGGACGGTTGGTGCGCATGCACG
GTGGTGCCCGGACGTTGCAACAAGAAGATCTTGGCGAGCTGTTTAAAAAACGGCGCAACGAACATACAGATGCTAAAAAT
ATCATGGCACGCAAGGCATTGGCGATGGTAGAACGCTATATGACCATTGGTTTGGATGCCAGTAGCAGCGATTGGTTTCT
TGCACGTTTGCTTCCCGATATGCCCCTGACAGTGGTGACAAACAGCATGGAAGTGGTGAAGGAGATCGGCACGCGTCCGA
GCATCCAGGTGATCTGCACCGGCGGTGACTACTGTAACCGCCACGGCGATTTCATCGGCGATATGGCCCAACGTAATTTC
CGCAGTCAGCATATTCACATCAGTTTCGTATCTTGCTTTGGCGTAAATCTGCTCACCGGTCTGTGGGAAAATAGCGAGCT
GAACGCGATGACTAAACGGACGATGATTGATGTCTCGCAAAAGACGGTTCTGCTGGCTGACAGCAGTAAATTCGGGCGAC
GTAGCCCCTACAATATGGCCGACTGGTCGCAGGTCAAGTACGTCGCGAATGATGGTTTAATGAATGAAGAAACGCTGAGG
CGCTTTGCGTCATTGGGTGTTACGGTAATTTAA

Upstream 100 bases:

>100_bases
AATGTAACTTTATTAGCTAGTTAGTGTTTAAAAAATACTGTTAATTAAAATTGTGCCAACATATCATGCAATGGCGAGTG
CCCGGGAGAGGATCGCCAAT

Downstream 100 bases:

>100_bases
CGTACGCCTTAACGGTTTTATTGTACGATATATACGATCCTGATGCCTCCTATCGGATCTTCGCCTGCCAGTTTATCCAG
AGGGAAACGATGGGTAATCA

Product: transcriptional regulator, DeoR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKNHIRRQQIVNAVNQVRSVTVGQLANQFHISVETVRRDLAWLEKMGRLVRMHGGARTLQQEDLGELFKKRRNEHTDAKN
IMARKALAMVERYMTIGLDASSSDWFLARLLPDMPLTVVTNSMEVVKEIGTRPSIQVICTGGDYCNRHGDFIGDMAQRNF
RSQHIHISFVSCFGVNLLTGLWENSELNAMTKRTMIDVSQKTVLLADSSKFGRRSPYNMADWSQVKYVANDGLMNEETLR
RFASLGVTVI

Sequences:

>Translated_250_residues
MKNHIRRQQIVNAVNQVRSVTVGQLANQFHISVETVRRDLAWLEKMGRLVRMHGGARTLQQEDLGELFKKRRNEHTDAKN
IMARKALAMVERYMTIGLDASSSDWFLARLLPDMPLTVVTNSMEVVKEIGTRPSIQVICTGGDYCNRHGDFIGDMAQRNF
RSQHIHISFVSCFGVNLLTGLWENSELNAMTKRTMIDVSQKTVLLADSSKFGRRSPYNMADWSQVKYVANDGLMNEETLR
RFASLGVTVI
>Mature_250_residues
MKNHIRRQQIVNAVNQVRSVTVGQLANQFHISVETVRRDLAWLEKMGRLVRMHGGARTLQQEDLGELFKKRRNEHTDAKN
IMARKALAMVERYMTIGLDASSSDWFLARLLPDMPLTVVTNSMEVVKEIGTRPSIQVICTGGDYCNRHGDFIGDMAQRNF
RSQHIHISFVSCFGVNLLTGLWENSELNAMTKRTMIDVSQKTVLLADSSKFGRRSPYNMADWSQVKYVANDGLMNEETLR
RFASLGVTVI

Specific function: Transcriptional activator of the fuc operon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789170, Length=228, Percent_Identity=35.0877192982456, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=34.9344978165939, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789519, Length=248, Percent_Identity=27.0161290322581, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789829, Length=239, Percent_Identity=30.1255230125523, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789059, Length=252, Percent_Identity=26.984126984127, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790753, Length=246, Percent_Identity=26.4227642276423, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1790635, Length=246, Percent_Identity=25.2032520325203, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI226510968, Length=240, Percent_Identity=26.25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082344, Length=233, Percent_Identity=24.8927038626609, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28433; Mature: 28433

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNHIRRQQIVNAVNQVRSVTVGQLANQFHISVETVRRDLAWLEKMGRLVRMHGGARTLQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QEDLGELFKKRRNEHTDAKNIMARKALAMVERYMTIGLDASSSDWFLARLLPDMPLTVVT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHH
NSMEVVKEIGTRPSIQVICTGGDYCNRHGDFIGDMAQRNFRSQHIHISFVSCFGVNLLTG
CHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
LWENSELNAMTKRTMIDVSQKTVLLADSSKFGRRSPYNMADWSQVKYVANDGLMNEETLR
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
RFASLGVTVI
HHHHCCCCCC
>Mature Secondary Structure
MKNHIRRQQIVNAVNQVRSVTVGQLANQFHISVETVRRDLAWLEKMGRLVRMHGGARTLQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
QEDLGELFKKRRNEHTDAKNIMARKALAMVERYMTIGLDASSSDWFLARLLPDMPLTVVT
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHH
NSMEVVKEIGTRPSIQVICTGGDYCNRHGDFIGDMAQRNFRSQHIHISFVSCFGVNLLTG
CHHHHHHHHCCCCCEEEEECCCHHHHHCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
LWENSELNAMTKRTMIDVSQKTVLLADSSKFGRRSPYNMADWSQVKYVANDGLMNEETLR
CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
RFASLGVTVI
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]