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The map label for this gene is pqrA [H]

Identifier: 238919600

GI number: 238919600

Start: 1658032

End: 1658430

Strand: Reverse

Name: pqrA [H]

Synonym: NT01EI_1699

Alternate gene names: 238919600

Gene position: 1658430-1658032 (Counterclockwise)

Preceding gene: 238919601

Following gene: 238919598

Centisome position: 43.5

GC content: 59.65

Gene sequence:

>399_bases
ATGACCCAGCAACAACGCAATGCCGCACTGGTCTGCGCCCTGAGCGAATGGATCGAGCGACACCTGGGGCGCGATATCTA
CCTGGATGAGCTGGCCCGTTATTCAGGTTATTCGCTATGGCATATGCAAAAGATCTTCCGGGAAACCACCGGTATGTCGC
TGGGGCGCTATATTCGCCTGCGCAAGCTCACCGGCGCCGCCCGGCGCCTGCGCCACAGCGATGAGGGGATCATTGATATC
GCGCTGTGCTACGGCTTTGCCTCTCAGTCCCACTTTACCTATATGTTTCGTAAACACTTTGGTATGACGCCAACCCGTTA
CCGTCTGCAGGCAGAGCAGCCCACAACGCCAGCGCCGGCGCTACACCACCAGTACGCCGCCGCGGCGCAAAGCGCCTGA

Upstream 100 bases:

>100_bases
ACGCCTGCAGTATTATCGTACCCTGACACTGCCAACCCTCCCTTATGATATAGATGGTAACCGCTAAGGTGCCCAGGCCA
TTTTCCACCACGGAGAGCCG

Downstream 100 bases:

>100_bases
TATCCATATCACACCGCTACCGCGCCGCCGCACGCCGTCTGGCATCCCTGCTGTGCCGTGCCATCGAGCTGCTGCTGGTC
GTTGCTCAGCAGAGGGCTGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTQQQRNAALVCALSEWIERHLGRDIYLDELARYSGYSLWHMQKIFRETTGMSLGRYIRLRKLTGAARRLRHSDEGIIDI
ALCYGFASQSHFTYMFRKHFGMTPTRYRLQAEQPTTPAPALHHQYAAAAQSA

Sequences:

>Translated_132_residues
MTQQQRNAALVCALSEWIERHLGRDIYLDELARYSGYSLWHMQKIFRETTGMSLGRYIRLRKLTGAARRLRHSDEGIIDI
ALCYGFASQSHFTYMFRKHFGMTPTRYRLQAEQPTTPAPALHHQYAAAAQSA
>Mature_131_residues
TQQQRNAALVCALSEWIERHLGRDIYLDELARYSGYSLWHMQKIFRETTGMSLGRYIRLRKLTGAARRLRHSDEGIIDIA
LCYGFASQSHFTYMFRKHFGMTPTRYRLQAEQPTTPAPALHHQYAAAAQSA

Specific function: Regulatory factor of blood coagulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=113, Percent_Identity=38.9380530973451, Blast_Score=97, Evalue=5e-22,
Organism=Escherichia coli, GI1790857, Length=105, Percent_Identity=43.8095238095238, Blast_Score=93, Evalue=6e-21,
Organism=Escherichia coli, GI1790497, Length=99, Percent_Identity=41.4141414141414, Blast_Score=89, Evalue=9e-20,
Organism=Escherichia coli, GI1790339, Length=104, Percent_Identity=29.8076923076923, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 15279; Mature: 15147

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQQRNAALVCALSEWIERHLGRDIYLDELARYSGYSLWHMQKIFRETTGMSLGRYIRL
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH
RKLTGAARRLRHSDEGIIDIALCYGFASQSHFTYMFRKHFGMTPTRYRLQAEQPTTPAPA
HHHHHHHHHHHCCCCCEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
LHHQYAAAAQSA
HHHHHHHHHCCC
>Mature Secondary Structure 
TQQQRNAALVCALSEWIERHLGRDIYLDELARYSGYSLWHMQKIFRETTGMSLGRYIRL
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH
RKLTGAARRLRHSDEGIIDIALCYGFASQSHFTYMFRKHFGMTPTRYRLQAEQPTTPAPA
HHHHHHHHHHHCCCCCEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
LHHQYAAAAQSA
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7726514 [H]