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The map label for this gene is yebA [H]

Identifier: 238919507

GI number: 238919507

Start: 1563856

End: 1565175

Strand: Direct

Name: yebA [H]

Synonym: NT01EI_1603

Alternate gene names: 238919507

Gene position: 1563856-1565175 (Clockwise)

Preceding gene: 238919506

Following gene: 238919508

Centisome position: 41.02

GC content: 59.09

Gene sequence:

>1320_bases
GTGCAGCAGATAGCACGTTCTATCGCTCAGGCATACAGTAATTTGCCCCGCCCCCACCGGGTTATGCTGGGGTCCCTGAG
CGTTGTCACCTTGGCTGTCGCCATCTGGCAGCCTTTTGTCTACCACCCTCGCGCGGTGGAGAGTGACACCCCGAAAAGCA
TACTGCGGGAGACGCAGCAGCTCAGTGCGCTGGCACCTGAGGCCAGTGAGCCTCTCGATCAGCCTGCGCCGGAAGACGAG
GTGCCCAAGGATGAGATCGACGACAGCAGCGATGATGCCAGCAGTCACGACTACGTGGTTTCCAGTGGCGATACCCTGGG
CAGTATCCTGACCCAGTACGGCGTTGATATGTCCAATGTATCGGCGCTGGCCAAGCAGTATCCTGTCTTGCGTAACCTGA
ACGTTGGCCAGACCCTGACCTGGCAGGTTAACGATGCCGGTACGCTGCAAAAGCTGACTTGGGAGGTCTCGCGCCGCGAG
AGCCGGGTCTATGAGCTGGGCCGCAGCGGGTATAAAGAGACGGTAGAAAACCAACAGGGTGAGTGGAAAAACCGGGTGAT
CACCGGCACCCTCAACGGCAGTTTTGTGGCCAGCGCTCAGGCTGCGGGGCTCAACCGTACTGAGATTAATACGGTTATCA
AGGCGCTGCAGTGGCAGATGGACTTCCGCAAGCTGCAGAAGGGCGATCGTTTTTCGGTGTTGCTGTCGCGTGAGATGCTG
GATGGTAAGAGCGCACAGAGTCAGGTCTTGGGAGTGCGCCTACGCAGCGGCGATAAAGATTATTACGCCATCCGTGCCGG
AGACGGTAAGTATTATGACCGCCAGGGTGCCGGGCTGGCCAAAGGCTTCATGCGCTACCCGACCAGCAAACATTTCCGCA
TCAGTTCCAACTTTAATCCGCACCGACTGAACCCGGTGACTGGCCGCGTTGCGCCCCATAAAGGGGTCGATTTTGCCATG
CCGGTCGGGACGCCGGTGCTGGCGGTCGGAGACGGCGAGGTAGTGATTGCCAAGCGCAGCGGCGCCGCAGGAAACTATGT
GGTGATCCGCCATGGTCGTCAGTATACGACCCGCTTTATGCACCTGAAGACTATCCTGGTTAAGCCTGGTCAGAAAGTGA
AGCGCGGCGATCGCGTTGCGCTCTCCGGCAACACCGGTCGCTCGACGGGTCCGCATCTGCACTATGAGTTTTGGGTAAAT
AACCAGGCGGTAAACCCACTGACGGTGAATTTGCCGCGCTCCGATGCCTTGACCGGCAAAGAGCGTAGCGCGTTCTTCGC
CCAGGTGCGTGATGTCGTGCCCCAGCTGCAGCTGGACTGA

Upstream 100 bases:

>100_bases
AGCGCGATCCCACTGAGTGCGGACAGCTATATGGTCTTTTTGACCACGCTGGCGCAGCAGTATTCAAGCTGCCTGAAGTG
AGATTAAGAGGAAAATCCGA

Downstream 100 bases:

>100_bases
AAACTCCAACGCAGGATAGCCCATTATCCTAAGCCCGCCTCGGCGGGCTTTTTATATGTACAGCTCGCCATCGTCCTGGA
TTTCACCTGTCGTCCCATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MQQIARSIAQAYSNLPRPHRVMLGSLSVVTLAVAIWQPFVYHPRAVESDTPKSILRETQQLSALAPEASEPLDQPAPEDE
VPKDEIDDSSDDASSHDYVVSSGDTLGSILTQYGVDMSNVSALAKQYPVLRNLNVGQTLTWQVNDAGTLQKLTWEVSRRE
SRVYELGRSGYKETVENQQGEWKNRVITGTLNGSFVASAQAAGLNRTEINTVIKALQWQMDFRKLQKGDRFSVLLSREML
DGKSAQSQVLGVRLRSGDKDYYAIRAGDGKYYDRQGAGLAKGFMRYPTSKHFRISSNFNPHRLNPVTGRVAPHKGVDFAM
PVGTPVLAVGDGEVVIAKRSGAAGNYVVIRHGRQYTTRFMHLKTILVKPGQKVKRGDRVALSGNTGRSTGPHLHYEFWVN
NQAVNPLTVNLPRSDALTGKERSAFFAQVRDVVPQLQLD

Sequences:

>Translated_439_residues
MQQIARSIAQAYSNLPRPHRVMLGSLSVVTLAVAIWQPFVYHPRAVESDTPKSILRETQQLSALAPEASEPLDQPAPEDE
VPKDEIDDSSDDASSHDYVVSSGDTLGSILTQYGVDMSNVSALAKQYPVLRNLNVGQTLTWQVNDAGTLQKLTWEVSRRE
SRVYELGRSGYKETVENQQGEWKNRVITGTLNGSFVASAQAAGLNRTEINTVIKALQWQMDFRKLQKGDRFSVLLSREML
DGKSAQSQVLGVRLRSGDKDYYAIRAGDGKYYDRQGAGLAKGFMRYPTSKHFRISSNFNPHRLNPVTGRVAPHKGVDFAM
PVGTPVLAVGDGEVVIAKRSGAAGNYVVIRHGRQYTTRFMHLKTILVKPGQKVKRGDRVALSGNTGRSTGPHLHYEFWVN
NQAVNPLTVNLPRSDALTGKERSAFFAQVRDVVPQLQLD
>Mature_439_residues
MQQIARSIAQAYSNLPRPHRVMLGSLSVVTLAVAIWQPFVYHPRAVESDTPKSILRETQQLSALAPEASEPLDQPAPEDE
VPKDEIDDSSDDASSHDYVVSSGDTLGSILTQYGVDMSNVSALAKQYPVLRNLNVGQTLTWQVNDAGTLQKLTWEVSRRE
SRVYELGRSGYKETVENQQGEWKNRVITGTLNGSFVASAQAAGLNRTEINTVIKALQWQMDFRKLQKGDRFSVLLSREML
DGKSAQSQVLGVRLRSGDKDYYAIRAGDGKYYDRQGAGLAKGFMRYPTSKHFRISSNFNPHRLNPVTGRVAPHKGVDFAM
PVGTPVLAVGDGEVVIAKRSGAAGNYVVIRHGRQYTTRFMHLKTILVKPGQKVKRGDRVALSGNTGRSTGPHLHYEFWVN
NQAVNPLTVNLPRSDALTGKERSAFFAQVRDVVPQLQLD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=444, Percent_Identity=67.5675675675676, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=114, Percent_Identity=35.0877192982456, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789099, Length=96, Percent_Identity=37.5, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48588; Mature: 48588

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIARSIAQAYSNLPRPHRVMLGSLSVVTLAVAIWQPFVYHPRAVESDTPKSILRETQQ
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LSALAPEASEPLDQPAPEDEVPKDEIDDSSDDASSHDYVVSSGDTLGSILTQYGVDMSNV
HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHH
SALAKQYPVLRNLNVGQTLTWQVNDAGTLQKLTWEVSRRESRVYELGRSGYKETVENQQG
HHHHHHCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
EWKNRVITGTLNGSFVASAQAAGLNRTEINTVIKALQWQMDFRKLQKGDRFSVLLSREML
CCCCCEEEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHH
DGKSAQSQVLGVRLRSGDKDYYAIRAGDGKYYDRQGAGLAKGFMRYPTSKHFRISSNFNP
CCCCCHHHEEEEEEECCCCCEEEEECCCCCEECCCCCCHHHHHHHCCCCCCEEEECCCCC
HRLNPVTGRVAPHKGVDFAMPVGTPVLAVGDGEVVIAKRSGAAGNYVVIRHGRQYTTRFM
CCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHH
HLKTILVKPGQKVKRGDRVALSGNTGRSTGPHLHYEFWVNNQAVNPLTVNLPRSDALTGK
HHHHEEECCCHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCC
ERSAFFAQVRDVVPQLQLD
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQQIARSIAQAYSNLPRPHRVMLGSLSVVTLAVAIWQPFVYHPRAVESDTPKSILRETQQ
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LSALAPEASEPLDQPAPEDEVPKDEIDDSSDDASSHDYVVSSGDTLGSILTQYGVDMSNV
HHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHH
SALAKQYPVLRNLNVGQTLTWQVNDAGTLQKLTWEVSRRESRVYELGRSGYKETVENQQG
HHHHHHCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCC
EWKNRVITGTLNGSFVASAQAAGLNRTEINTVIKALQWQMDFRKLQKGDRFSVLLSREML
CCCCCEEEEECCCCEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHH
DGKSAQSQVLGVRLRSGDKDYYAIRAGDGKYYDRQGAGLAKGFMRYPTSKHFRISSNFNP
CCCCCHHHEEEEEEECCCCCEEEEECCCCCEECCCCCCHHHHHHHCCCCCCEEEECCCCC
HRLNPVTGRVAPHKGVDFAMPVGTPVLAVGDGEVVIAKRSGAAGNYVVIRHGRQYTTRFM
CCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHHH
HLKTILVKPGQKVKRGDRVALSGNTGRSTGPHLHYEFWVNNQAVNPLTVNLPRSDALTGK
HHHHEEECCCHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCC
ERSAFFAQVRDVVPQLQLD
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]