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The map label for this gene is yecD [H]

Identifier: 238919351

GI number: 238919351

Start: 1422115

End: 1422693

Strand: Direct

Name: yecD [H]

Synonym: NT01EI_1445

Alternate gene names: 238919351

Gene position: 1422115-1422693 (Clockwise)

Preceding gene: 238919350

Following gene: 238919354

Centisome position: 37.3

GC content: 65.63

Gene sequence:

>579_bases
ATGCTACAGCTTGATCCGGCCACGACGGCCCTGGTACTGATCGATTTACAGCAGGGGATCCTGCCCGTCGCTGTTGCGCC
CTATACCGGCAGCGCAGTGGTTGCCCGTGCGGCCACGCTGGCGGCGGCGTTCCGCGCCCGGGCGATGCCGGTGATCCTGG
TTCGCGTGGGATGGAGCGCCTCTGGCGCCGATGCCCTGCGTCAGCCGGTCGATGCGCCGGCGTCGGGGGGGACGCTGGCG
GATAACTGGTGGGATTATCCGCCGGCGCTGACGCCACAGGCGCAGGATATTCAGATCGTTAAGCATCAGTGGGGGGCCTT
TTACGGCACCGATCTGGATCTGCAGCTGCGCCGTCGCGGTATTGATACGCTGGTGCTCGGGGGGATCTCGACCAATATCG
GGGTCGAATCGACGGCGCGCAGCGCCTGGGAGCATGGCTATGGGCTATGGATTGCAGAGGATCTCTGCGCGGCGGCGGAT
GAGGTCCAACACCGTCACAGCTTCCGCTACATTTTCCCGCGCATCGCCCGGGTGTCACACAGCGCGGCGCTGTTGGCCGC
GCTGGGAAAGGAGGGATAA

Upstream 100 bases:

>100_bases
GGCGGGCGGGTGAGACGCATCCCACCACGGCCTCAGTTACACTGAGCTACCGGTGGCGATGCGTCGATCGCCGCGCTGAC
TGCCATTAAGGAGCATCATG

Downstream 100 bases:

>100_bases
AACCCGTAGGTTACGGGCTGCGCCGGGAGCGCGCGCAGCGCGGACGGACGTTTACTGATGGCGCTGGGCCGCGGAGTCCT
GGACGAGAAACGGATCGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MLQLDPATTALVLIDLQQGILPVAVAPYTGSAVVARAATLAAAFRARAMPVILVRVGWSASGADALRQPVDAPASGGTLA
DNWWDYPPALTPQAQDIQIVKHQWGAFYGTDLDLQLRRRGIDTLVLGGISTNIGVESTARSAWEHGYGLWIAEDLCAAAD
EVQHRHSFRYIFPRIARVSHSAALLAALGKEG

Sequences:

>Translated_192_residues
MLQLDPATTALVLIDLQQGILPVAVAPYTGSAVVARAATLAAAFRARAMPVILVRVGWSASGADALRQPVDAPASGGTLA
DNWWDYPPALTPQAQDIQIVKHQWGAFYGTDLDLQLRRRGIDTLVLGGISTNIGVESTARSAWEHGYGLWIAEDLCAAAD
EVQHRHSFRYIFPRIARVSHSAALLAALGKEG
>Mature_192_residues
MLQLDPATTALVLIDLQQGILPVAVAPYTGSAVVARAATLAAAFRARAMPVILVRVGWSASGADALRQPVDAPASGGTLA
DNWWDYPPALTPQAQDIQIVKHQWGAFYGTDLDLQLRRRGIDTLVLGGISTNIGVESTARSAWEHGYGLWIAEDLCAAAD
EVQHRHSFRYIFPRIARVSHSAALLAALGKEG

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=188, Percent_Identity=63.2978723404255, Blast_Score=240, Evalue=5e-65,
Organism=Escherichia coli, GI87081820, Length=176, Percent_Identity=32.9545454545455, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20535; Mature: 20535

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLDPATTALVLIDLQQGILPVAVAPYTGSAVVARAATLAAAFRARAMPVILVRVGWSA
CCEECCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
SGADALRQPVDAPASGGTLADNWWDYPPALTPQAQDIQIVKHQWGAFYGTDLDLQLRRRG
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEECCCCCHHHHHHCC
IDTLVLGGISTNIGVESTARSAWEHGYGLWIAEDLCAAADEVQHRHSFRYIFPRIARVSH
CCEEEECCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAALLAALGKEG
HHHHHHHHCCCC
>Mature Secondary Structure
MLQLDPATTALVLIDLQQGILPVAVAPYTGSAVVARAATLAAAFRARAMPVILVRVGWSA
CCEECCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC
SGADALRQPVDAPASGGTLADNWWDYPPALTPQAQDIQIVKHQWGAFYGTDLDLQLRRRG
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEECCCCCHHHHHHCC
IDTLVLGGISTNIGVESTARSAWEHGYGLWIAEDLCAAADEVQHRHSFRYIFPRIARVSH
CCEEEECCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAALLAALGKEG
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]