Click here to switch to the map view.

The map label for this gene is napD [H]

Identifier: 238919145

GI number: 238919145

Start: 1212622

End: 1212888

Strand: Direct

Name: napD [H]

Synonym: NT01EI_1216

Alternate gene names: 238919145

Gene position: 1212622-1212888 (Clockwise)

Preceding gene: 238919144

Following gene: 238919146

Centisome position: 31.81

GC content: 61.05

Gene sequence:

>267_bases
ATGAGCAGTGAGATATGGCATGTCTGCGGGCTGGTGGTTCAGGCCCGGCCACAGACCGTCGCAGAGGTGGCGCAGGCGCT
GTCCGCGATGGCGGAGACCGAAGTCGCGGCCACTGAGCCGCAGCAGGGCAAGCTTGTGGTTGTCATGCAAAGCGAAGATT
CAGGCAGGCTGCTGGATCGAATTGAGTCGGTGCGCAATGTAGCTGGCGTGCTGGCGGTGTCGCTGGTTTATCACCAGCAG
GATGAGCAAGGTGAGGATACGCCATGA

Upstream 100 bases:

>100_bases
GTAATGGCTGCGGTGCCTGTGTTGCTGCCTGCCCGGTGAACGCTATTCAAATAGTCGACCGAGGTGAGCCCATCGAGGTT
ATCGAGGTTAAGGACGCGTA

Downstream 100 bases:

>100_bases
AACTCAGTCGTCGAGACTTCATGAAAGCTAACGCTGTTGCTGCCGCTGCCGCTGCAGCGGGGCTGACTATCCCGACCGTG
GCACGCGCGGTGACGGATGC

Product: NapD protein

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MSSEIWHVCGLVVQARPQTVAEVAQALSAMAETEVAATEPQQGKLVVVMQSEDSGRLLDRIESVRNVAGVLAVSLVYHQQ
DEQGEDTP

Sequences:

>Translated_88_residues
MSSEIWHVCGLVVQARPQTVAEVAQALSAMAETEVAATEPQQGKLVVVMQSEDSGRLLDRIESVRNVAGVLAVSLVYHQQ
DEQGEDTP
>Mature_87_residues
SSEIWHVCGLVVQARPQTVAEVAQALSAMAETEVAATEPQQGKLVVVMQSEDSGRLLDRIESVRNVAGVLAVSLVYHQQD
EQGEDTP

Specific function: Plays a role in the correct assembly of subunits of the periplasmic napAB enzyme [H]

COG id: COG3062

COG function: function code P; Uncharacterized protein involved in formation of periplasmic nitrate reductase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788535, Length=83, Percent_Identity=55.421686746988, Blast_Score=97, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005623 [H]

Pfam domain/function: PF03927 NapD [H]

EC number: NA

Molecular weight: Translated: 9489; Mature: 9358

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEIWHVCGLVVQARPQTVAEVAQALSAMAETEVAATEPQQGKLVVVMQSEDSGRLLDR
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHH
IESVRNVAGVLAVSLVYHQQDEQGEDTP
HHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSEIWHVCGLVVQARPQTVAEVAQALSAMAETEVAATEPQQGKLVVVMQSEDSGRLLDR
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHH
IESVRNVAGVLAVSLVYHQQDEQGEDTP
HHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]