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The map label for this gene is napF [H]

Identifier: 238919144

GI number: 238919144

Start: 1212104

End: 1212622

Strand: Direct

Name: napF [H]

Synonym: NT01EI_1215

Alternate gene names: 238919144

Gene position: 1212104-1212622 (Clockwise)

Preceding gene: 238919141

Following gene: 238919145

Centisome position: 31.79

GC content: 60.69

Gene sequence:

>519_bases
ATGACTACCCTGTCCCGACGCCATTTGCTGCGCGGCCGCTGGCACCATGCCGCCACGCAGGTGCGCCCGCCGTGGTCTGT
GAATGAGTCGGCCTTTGTTATCGGTTGTAGCCGTTGTCATGCCTGTATTTCCCAGTGTGAAAGCGGTGTGCTGGTCGTTG
GTCAGGGCCACTTCCCCACCCTTGATTTTTCCCGGGCTGAATGCACTTTTTGTCGGCGATGCGCCGATGCCTGCCCAGAG
GCACTGTTTCTCGACGCGGCAGAGGCGCCCTGGCACCTGCAGGCGGAGACAGACACACACTGCCTGACCCGGCGCGGTAT
TGAGTGCCGCAGCTGTCAGGATAGCTGTGAGCCGCGGGCGATAACGTTTGTTCCACAGCTGGGCGGCATCGCGGCTATCC
ACTTGGCATCCGAGTCGTGTAATGGCTGCGGTGCCTGTGTTGCTGCCTGCCCGGTGAACGCTATTCAAATAGTCGACCGA
GGTGAGCCCATCGAGGTTATCGAGGTTAAGGACGCGTAA

Upstream 100 bases:

>100_bases
TAAATTAAGCGCGATAAACCGTTAAGCGCTTTTGTAAGCGCTTTTGGGCCCGCGGAGTCACTTTTTAGCTGATGGATGAG
CAATGTCACAGGAGCGCGCG

Downstream 100 bases:

>100_bases
TGAGCAGTGAGATATGGCATGTCTGCGGGCTGGTGGTTCAGGCCCGGCCACAGACCGTCGCAGAGGTGGCGCAGGCGCTG
TCCGCGATGGCGGAGACCGA

Product: ferredoxin-type protein NapF

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MTTLSRRHLLRGRWHHAATQVRPPWSVNESAFVIGCSRCHACISQCESGVLVVGQGHFPTLDFSRAECTFCRRCADACPE
ALFLDAAEAPWHLQAETDTHCLTRRGIECRSCQDSCEPRAITFVPQLGGIAAIHLASESCNGCGACVAACPVNAIQIVDR
GEPIEVIEVKDA

Sequences:

>Translated_172_residues
MTTLSRRHLLRGRWHHAATQVRPPWSVNESAFVIGCSRCHACISQCESGVLVVGQGHFPTLDFSRAECTFCRRCADACPE
ALFLDAAEAPWHLQAETDTHCLTRRGIECRSCQDSCEPRAITFVPQLGGIAAIHLASESCNGCGACVAACPVNAIQIVDR
GEPIEVIEVKDA
>Mature_171_residues
TTLSRRHLLRGRWHHAATQVRPPWSVNESAFVIGCSRCHACISQCESGVLVVGQGHFPTLDFSRAECTFCRRCADACPEA
LFLDAAEAPWHLQAETDTHCLTRRGIECRSCQDSCEPRAITFVPQLGGIAAIHLASESCNGCGACVAACPVNAIQIVDRG
EPIEVIEVKDA

Specific function: Involved in electron transfer [H]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1788536, Length=151, Percent_Identity=51.6556291390728, Blast_Score=164, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004496 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 18675; Mature: 18544

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
9.9 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLSRRHLLRGRWHHAATQVRPPWSVNESAFVIGCSRCHACISQCESGVLVVGQGHFPT
CCCCHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCC
LDFSRAECTFCRRCADACPEALFLDAAEAPWHLQAETDTHCLTRRGIECRSCQDSCEPRA
CCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCE
ITFVPQLGGIAAIHLASESCNGCGACVAACPVNAIQIVDRGEPIEVIEVKDA
EEEEECCCCEEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCC
>Mature Secondary Structure 
TTLSRRHLLRGRWHHAATQVRPPWSVNESAFVIGCSRCHACISQCESGVLVVGQGHFPT
CCCHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEECCCCCC
LDFSRAECTFCRRCADACPEALFLDAAEAPWHLQAETDTHCLTRRGIECRSCQDSCEPRA
CCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCE
ITFVPQLGGIAAIHLASESCNGCGACVAACPVNAIQIVDRGEPIEVIEVKDA
EEEEECCCCEEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]