| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is ybgO [C]
Identifier: 238919063
GI number: 238919063
Start: 1128268
End: 1129335
Strand: Direct
Name: ybgO [C]
Synonym: NT01EI_1131
Alternate gene names: 238919063
Gene position: 1128268-1129335 (Clockwise)
Preceding gene: 238919062
Following gene: 238919064
Centisome position: 29.6
GC content: 58.43
Gene sequence:
>1068_bases ATGAAAGGCCTAAGTATAAAACAGGCGCTTGTATTCACGCTGCTGCTGCTGGGGCTCTGCATCAGCCGTCAGGCATCCGC GCTCTCCTGTCGGGAGGGCAGTAACGCAGGGAGCTGGGTACCCATTGGGAGTATTTATCAGCGCATCGATATCGGGCGGC CGATTATCCTGTCTGCCGCCGACTTTACCGCCGGTAATCTGATTTGGCGCTCGCAGAACTTTAGCACCACCTTTACCTGC TGGGATAACTGGAATACCGGAAGGGGAGAACATGCCTATATTTACTGGAATCCAAAGGATGCGTTTGGGAGCCTGCACCG TTCACTGTCGGTTGGGGTCTCGATCAATGGTATCGACTATGATGCGATTAACATGAAACAGAGCGGCGGTCGGCCCAGCG GCCCCGATCTGGGCGAGGGGACATCCAACAACGGCGGTGGTATCGCCAGATCGCGTACGGTCACCGTCAGCTATTCGGTG TACATCAAGGCCACCGGCGTAACGCCGCCAGCGGGTAGTTTCCCGGCGCTGGGACTGCCATCGCTGTTTCAGATTGACGG CGTGGGCGGCTTGGACGCGCGCCCCAACGGCAATTTTAACGCCTATATATCCGGGTTGGATAAGATCCAGGTGACCCACT GCAACCCGCAGATCAGCGTGCTGGCGAATCATGGCAACAGTATCGATTTCGGTACGCTGAGCGCCACCGGTGCGCGTCCG GGCGTTATCGCCCGCCAGATACCATTCAGTATCAAGGCGACGCTGCGCGGCGGAGAGTGCGGCGGGCAGCAGCTGCAGGC CAGCTTCAGTACCCTGAGGGCGGACGTTGGCGATCGGTCGCTGATTCTGCCGGATACCAACCCGGGCGTGGGGATTTTCC TGACAAAGGCGGGTGATACCAGCACTACACCGATCCCGTTGCAGAGTAATATCGATTTCGGCGGCCGACTGCAGGATAAG CAGAATGAGGTGAGCGAGAACTTTACCGCCAACCTGAAATGGCTGACCAATCGGCCGACGGCGGGGCGCTTCCATGCGAC GGCCAACGTCGACGTCACCTTTAAATAG
Upstream 100 bases:
>100_bases GTGCACGCTGGTGCTGCCGTCCGATCTGTCGATGCGGAATACCACGGTGGGCTACCAGGAACTCTCTCTACCCTGTCAGA TTCAATAAGGTGACGGATTA
Downstream 100 bases:
>100_bases TCTGGTATGCAGTCTTGGTGCGCAGTGCGTGTAACCTTTAGAGTCTTTAATGCATTGTTAGGTGAGTTACGTCACAATAA ATGGCTGATTTGTCAACAGA
Product: fimbrial protein
Products: NA
Alternate protein names: Fimbrial Adhesin
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MKGLSIKQALVFTLLLLGLCISRQASALSCREGSNAGSWVPIGSIYQRIDIGRPIILSAADFTAGNLIWRSQNFSTTFTC WDNWNTGRGEHAYIYWNPKDAFGSLHRSLSVGVSINGIDYDAINMKQSGGRPSGPDLGEGTSNNGGGIARSRTVTVSYSV YIKATGVTPPAGSFPALGLPSLFQIDGVGGLDARPNGNFNAYISGLDKIQVTHCNPQISVLANHGNSIDFGTLSATGARP GVIARQIPFSIKATLRGGECGGQQLQASFSTLRADVGDRSLILPDTNPGVGIFLTKAGDTSTTPIPLQSNIDFGGRLQDK QNEVSENFTANLKWLTNRPTAGRFHATANVDVTFK
Sequences:
>Translated_355_residues MKGLSIKQALVFTLLLLGLCISRQASALSCREGSNAGSWVPIGSIYQRIDIGRPIILSAADFTAGNLIWRSQNFSTTFTC WDNWNTGRGEHAYIYWNPKDAFGSLHRSLSVGVSINGIDYDAINMKQSGGRPSGPDLGEGTSNNGGGIARSRTVTVSYSV YIKATGVTPPAGSFPALGLPSLFQIDGVGGLDARPNGNFNAYISGLDKIQVTHCNPQISVLANHGNSIDFGTLSATGARP GVIARQIPFSIKATLRGGECGGQQLQASFSTLRADVGDRSLILPDTNPGVGIFLTKAGDTSTTPIPLQSNIDFGGRLQDK QNEVSENFTANLKWLTNRPTAGRFHATANVDVTFK >Mature_355_residues MKGLSIKQALVFTLLLLGLCISRQASALSCREGSNAGSWVPIGSIYQRIDIGRPIILSAADFTAGNLIWRSQNFSTTFTC WDNWNTGRGEHAYIYWNPKDAFGSLHRSLSVGVSINGIDYDAINMKQSGGRPSGPDLGEGTSNNGGGIARSRTVTVSYSV YIKATGVTPPAGSFPALGLPSLFQIDGVGGLDARPNGNFNAYISGLDKIQVTHCNPQISVLANHGNSIDFGTLSATGARP GVIARQIPFSIKATLRGGECGGQQLQASFSTLRADVGDRSLILPDTNPGVGIFLTKAGDTSTTPIPLQSNIDFGGRLQDK QNEVSENFTANLKWLTNRPTAGRFHATANVDVTFK
Specific function: May Be Involved In A Fimbrial System Chaperoned By Ybgp And Exported By Ybgq. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37696; Mature: 37696
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGLSIKQALVFTLLLLGLCISRQASALSCREGSNAGSWVPIGSIYQRIDIGRPIILSAA CCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC DFTAGNLIWRSQNFSTTFTCWDNWNTGRGEHAYIYWNPKDAFGSLHRSLSVGVSINGIDY CCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHEEEECEEECCCCE DAINMKQSGGRPSGPDLGEGTSNNGGGIARSRTVTVSYSVYIKATGVTPPAGSFPALGLP EEEECHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCC SLFQIDGVGGLDARPNGNFNAYISGLDKIQVTHCNPQISVLANHGNSIDFGTLSATGARP CEEEECCCCCCCCCCCCCEEEEEECCEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCC GVIARQIPFSIKATLRGGECGGQQLQASFSTLRADVGDRSLILPDTNPGVGIFLTKAGDT CEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCC STTPIPLQSNIDFGGRLQDKQNEVSENFTANLKWLTNRPTAGRFHATANVDVTFK CCCCEEECCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEEEEEC >Mature Secondary Structure MKGLSIKQALVFTLLLLGLCISRQASALSCREGSNAGSWVPIGSIYQRIDIGRPIILSAA CCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEC DFTAGNLIWRSQNFSTTFTCWDNWNTGRGEHAYIYWNPKDAFGSLHRSLSVGVSINGIDY CCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHEEEECEEECCCCE DAINMKQSGGRPSGPDLGEGTSNNGGGIARSRTVTVSYSVYIKATGVTPPAGSFPALGLP EEEECHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCC SLFQIDGVGGLDARPNGNFNAYISGLDKIQVTHCNPQISVLANHGNSIDFGTLSATGARP CEEEECCCCCCCCCCCCCEEEEEECCEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCC GVIARQIPFSIKATLRGGECGGQQLQASFSTLRADVGDRSLILPDTNPGVGIFLTKAGDT CEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCC STTPIPLQSNIDFGGRLQDKQNEVSENFTANLKWLTNRPTAGRFHATANVDVTFK CCCCEEECCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA