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The map label for this gene is fimD [H]

Identifier: 238919062

GI number: 238919062

Start: 1125664

End: 1128255

Strand: Direct

Name: fimD [H]

Synonym: NT01EI_1130

Alternate gene names: 238919062

Gene position: 1125664-1128255 (Clockwise)

Preceding gene: 238919061

Following gene: 238919063

Centisome position: 29.53

GC content: 59.61

Gene sequence:

>2592_bases
ATGGCGCAACACCAACGGACAGGATCACTGAAGACAGAGCCGACACGCTGGATGTGCCTGGCATTTGCCGCCGGTAGCCT
GTCCCTGGGGTGCAGCGCATCGGCCTGGGCCGAATTCAACATGTCATTCGTTCACGGCAGCGAAAATGTCAACGCCGCTC
AGGCGGTGGCACAGGGTAACGCGTTGCCGCCCGGTGGGTATCCGTTTGCGATTTACCTGAACAAGCAGCAGGTCGATAAT
AAAATTATCCGTTTCACGGCGAAAGAGGGCGCCGCTGCCCAGCCCTGCCTGACGGTGGAGGATCTGCTTAACTATGGGGT
GAAACTGCCCGATACGCTAACCCCGGGCAGCTGCGTCGACGTGGCCGCCACTGTTAAGGGTAGCACGCTCTCCTTTGATC
CGGCGGTGCAGCAGATCGACCTTTCCGTGCCGCAGGTTATGCTGGTGCAGCACGCGCGCGGCGATATCCCGACGACCCTG
TACGATCAGGGGATCAACGCTGCTTTTAGCAATTACAGCCTGAACTATAACCGCAACAGCAGTCAGCAGCAGAGTGGCCA
AAACAGCGAATATACCTTTCTGTCCCTGAATAACGGTCTTAATCTGTGGCGCTGGCGCCTGCGCAATAATATGACCATGA
ATAAAATCAGCGGTCAGTCGGCGCAGTGGGACAATATCGCTACCTGGGCGGAGATGGATATCGCGTCCTGGCGTAGTCGG
GTGCAACTGGGGCAGGCCAGCACCAATAATACCGTTTTTAATAGCATTCAGTTTCGCGGCGTCCAGCTTTCCAGCGTGGA
TGATATGCTGCCCGAAAGCCTGCGCGGCTATGCCCCGGTGGTGCGCGGCATCGCCTCAACCAACGCCCGCGTCGATATTC
GTCAGAACGGCTATGTGGTTTACAGCACCAACGTGGCGCCGGGCGCTTTTGAGATCCGCGATATCTACCCGCACTCCAAC
AGTGGCGACCTGCAGGTGACGGTCAATGAGGCCGACGGCACCCGTAAGCACTTTAGCGTCTCTTACTCCTCCATCGCCAA
TATGCTGCGTGAGGGGATCTGGAACTATCAGCTGACGGCGGGCCGCTACCAGAGCGGTGATACCCGCTATACCCCCAACT
TTATGCAGGGGACGCTGGCGCGCGGCATTGCCTATGGTCTGACGCCCTATGGCGGACTGATTGTGGCGGATAACTATCGC
GCCGCCGCGTTGGGTATGGCCAAAAATATGGGCGAATGGGGCGCCATCTCCATTGATGGTGCCTATTCCGATACGACGCT
GGCCAACGGTGAGCGCGCCCGCGGGCAGAGCTACCGTTTTCTCTACTCCAAGTCCCTGAACCAGATGGGCACCAACGTAC
AGCTGGCAGGCTATCGCTATGCGACGTCGGGCTATTATGACTTTGCCGATGCGGTAGAGGAGCGCAGCCGATGGCGGCAG
GGGATATACGAGAATAACTACTATAACCCGGGCGATGGGCAGACCGGGATCCCCGATCTGGACAATCGCAACCGACATCG
CGTGTATACCCCGCGCTATGCCAACAAGCGCGAGCGCGTGGATGTCTCCATTAACCAGCAGCTGTGGCAGGGGGCGACGT
TGTATGCCAACGTCAGCAGCCAGAGCTACTGGGGCGGCGGTGGCCGGGATCGTACCGTCCAGTTGGGCTACAACGATGCC
ATTAAGAGCATTAGCTATGGCGTATACCTGCAGGATACGCGCAGCCAGTACGGCTACGCCGATCGCAGTATCAACCTGTC
GGTGTCGATTCCGCTGAACTGGGGACGCGACAATCATTCGGCCTCGCTGAACGTCAGCGGAACCCACAGCCGCCAGAGCG
GGGACAGCTATAACACCGGCATCAGTGGAACGGCGCTGAGCGATCAACGGCTGAACTACGCCCTGAGTACCGGCCATACC
GCGTCGGCGGGGCAGAGCAGCGCGCTGAACCTGGACTACCGCGGTGCCTATGGCAACCTGGACGGCAGCTATAGCTACAG
CAACAGCTATAATCAGCTGGGGCTGGGGCTATCCGGTGGCGTATTGCTTCACTCCGGCGGCGTGACGCTGTCGCAGCCGC
TGCAGAATACGGTCATTCTGGTCGAGGCGAAGCACGCCAGCGGCGTTCGCCTGGATAACCAGAGCGGCGTGGCCATCGAT
CCCTTCGGCTATGCGGTGGTCCCCTCGGCGACACCATACAGATTCAACGCGGTGGCGCTGCATACGCAGGACTTTGAGCC
AGGTTTGGATGTGCCGGTGGCCAGCAGGCAGGTGGTGCCGACGGAGAAGGCTATTGTGAAGGTGCGTTTTGACACGTTTT
ACGGCGTGAGCCTACTGATCCATAGCCACCTCAACGGTGGCGGCTACCCGGCGGTTGGCGCCAGCGTCTTTAACCAGCAG
GGACGTAACAGCGGAACCGTGGGGCTTAACGGCGATCTGTATGTATCCGGAGCGCAGCCGGGCGAGAGGCTGACCCTGCG
CTGGGGCAATCAGCCGGGCCAGCAGTGCACGCTGGTGCTGCCGTCCGATCTGTCGATGCGGAATACCACGGTGGGCTACC
AGGAACTCTCTCTACCCTGTCAGATTCAATAA

Upstream 100 bases:

>100_bases
GAGCTCACGTCGGAAATACAGTCTCCTTCAGCTACATCAATGACTTTGGGGGCCGGACTGAGGTTAAGGACGCGACAGTA
TACTGACGGAGAGAAGCGGG

Downstream 100 bases:

>100_bases
GGTGACGGATTAATGAAAGGCCTAAGTATAAAACAGGCGCTTGTATTCACGCTGCTGCTGCTGGGGCTCTGCATCAGCCG
TCAGGCATCCGCGCTCTCCT

Product: outer membrane usher protein FimD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 863; Mature: 862

Protein sequence:

>863_residues
MAQHQRTGSLKTEPTRWMCLAFAAGSLSLGCSASAWAEFNMSFVHGSENVNAAQAVAQGNALPPGGYPFAIYLNKQQVDN
KIIRFTAKEGAAAQPCLTVEDLLNYGVKLPDTLTPGSCVDVAATVKGSTLSFDPAVQQIDLSVPQVMLVQHARGDIPTTL
YDQGINAAFSNYSLNYNRNSSQQQSGQNSEYTFLSLNNGLNLWRWRLRNNMTMNKISGQSAQWDNIATWAEMDIASWRSR
VQLGQASTNNTVFNSIQFRGVQLSSVDDMLPESLRGYAPVVRGIASTNARVDIRQNGYVVYSTNVAPGAFEIRDIYPHSN
SGDLQVTVNEADGTRKHFSVSYSSIANMLREGIWNYQLTAGRYQSGDTRYTPNFMQGTLARGIAYGLTPYGGLIVADNYR
AAALGMAKNMGEWGAISIDGAYSDTTLANGERARGQSYRFLYSKSLNQMGTNVQLAGYRYATSGYYDFADAVEERSRWRQ
GIYENNYYNPGDGQTGIPDLDNRNRHRVYTPRYANKRERVDVSINQQLWQGATLYANVSSQSYWGGGGRDRTVQLGYNDA
IKSISYGVYLQDTRSQYGYADRSINLSVSIPLNWGRDNHSASLNVSGTHSRQSGDSYNTGISGTALSDQRLNYALSTGHT
ASAGQSSALNLDYRGAYGNLDGSYSYSNSYNQLGLGLSGGVLLHSGGVTLSQPLQNTVILVEAKHASGVRLDNQSGVAID
PFGYAVVPSATPYRFNAVALHTQDFEPGLDVPVASRQVVPTEKAIVKVRFDTFYGVSLLIHSHLNGGGYPAVGASVFNQQ
GRNSGTVGLNGDLYVSGAQPGERLTLRWGNQPGQQCTLVLPSDLSMRNTTVGYQELSLPCQIQ

Sequences:

>Translated_863_residues
MAQHQRTGSLKTEPTRWMCLAFAAGSLSLGCSASAWAEFNMSFVHGSENVNAAQAVAQGNALPPGGYPFAIYLNKQQVDN
KIIRFTAKEGAAAQPCLTVEDLLNYGVKLPDTLTPGSCVDVAATVKGSTLSFDPAVQQIDLSVPQVMLVQHARGDIPTTL
YDQGINAAFSNYSLNYNRNSSQQQSGQNSEYTFLSLNNGLNLWRWRLRNNMTMNKISGQSAQWDNIATWAEMDIASWRSR
VQLGQASTNNTVFNSIQFRGVQLSSVDDMLPESLRGYAPVVRGIASTNARVDIRQNGYVVYSTNVAPGAFEIRDIYPHSN
SGDLQVTVNEADGTRKHFSVSYSSIANMLREGIWNYQLTAGRYQSGDTRYTPNFMQGTLARGIAYGLTPYGGLIVADNYR
AAALGMAKNMGEWGAISIDGAYSDTTLANGERARGQSYRFLYSKSLNQMGTNVQLAGYRYATSGYYDFADAVEERSRWRQ
GIYENNYYNPGDGQTGIPDLDNRNRHRVYTPRYANKRERVDVSINQQLWQGATLYANVSSQSYWGGGGRDRTVQLGYNDA
IKSISYGVYLQDTRSQYGYADRSINLSVSIPLNWGRDNHSASLNVSGTHSRQSGDSYNTGISGTALSDQRLNYALSTGHT
ASAGQSSALNLDYRGAYGNLDGSYSYSNSYNQLGLGLSGGVLLHSGGVTLSQPLQNTVILVEAKHASGVRLDNQSGVAID
PFGYAVVPSATPYRFNAVALHTQDFEPGLDVPVASRQVVPTEKAIVKVRFDTFYGVSLLIHSHLNGGGYPAVGASVFNQQ
GRNSGTVGLNGDLYVSGAQPGERLTLRWGNQPGQQCTLVLPSDLSMRNTTVGYQELSLPCQIQ
>Mature_862_residues
AQHQRTGSLKTEPTRWMCLAFAAGSLSLGCSASAWAEFNMSFVHGSENVNAAQAVAQGNALPPGGYPFAIYLNKQQVDNK
IIRFTAKEGAAAQPCLTVEDLLNYGVKLPDTLTPGSCVDVAATVKGSTLSFDPAVQQIDLSVPQVMLVQHARGDIPTTLY
DQGINAAFSNYSLNYNRNSSQQQSGQNSEYTFLSLNNGLNLWRWRLRNNMTMNKISGQSAQWDNIATWAEMDIASWRSRV
QLGQASTNNTVFNSIQFRGVQLSSVDDMLPESLRGYAPVVRGIASTNARVDIRQNGYVVYSTNVAPGAFEIRDIYPHSNS
GDLQVTVNEADGTRKHFSVSYSSIANMLREGIWNYQLTAGRYQSGDTRYTPNFMQGTLARGIAYGLTPYGGLIVADNYRA
AALGMAKNMGEWGAISIDGAYSDTTLANGERARGQSYRFLYSKSLNQMGTNVQLAGYRYATSGYYDFADAVEERSRWRQG
IYENNYYNPGDGQTGIPDLDNRNRHRVYTPRYANKRERVDVSINQQLWQGATLYANVSSQSYWGGGGRDRTVQLGYNDAI
KSISYGVYLQDTRSQYGYADRSINLSVSIPLNWGRDNHSASLNVSGTHSRQSGDSYNTGISGTALSDQRLNYALSTGHTA
SAGQSSALNLDYRGAYGNLDGSYSYSNSYNQLGLGLSGGVLLHSGGVTLSQPLQNTVILVEAKHASGVRLDNQSGVAIDP
FGYAVVPSATPYRFNAVALHTQDFEPGLDVPVASRQVVPTEKAIVKVRFDTFYGVSLLIHSHLNGGGYPAVGASVFNQQG
RNSGTVGLNGDLYVSGAQPGERLTLRWGNQPGQQCTLVLPSDLSMRNTTVGYQELSLPCQIQ

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=846, Percent_Identity=39.2434988179669, Blast_Score=531, Evalue=1e-152,
Organism=Escherichia coli, GI1787172, Length=837, Percent_Identity=36.0812425328554, Blast_Score=474, Evalue=1e-134,
Organism=Escherichia coli, GI1786744, Length=875, Percent_Identity=34.6285714285714, Blast_Score=464, Evalue=1e-132,
Organism=Escherichia coli, GI1789533, Length=799, Percent_Identity=35.5444305381727, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1786332, Length=842, Percent_Identity=30.166270783848, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1788427, Length=839, Percent_Identity=29.0822407628129, Blast_Score=328, Evalue=8e-91,
Organism=Escherichia coli, GI87081778, Length=870, Percent_Identity=26.3218390804598, Blast_Score=224, Evalue=2e-59,
Organism=Escherichia coli, GI1789610, Length=347, Percent_Identity=28.8184438040346, Blast_Score=106, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 94035; Mature: 93904

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQHQRTGSLKTEPTRWMCLAFAAGSLSLGCSASAWAEFNMSFVHGSENVNAAQAVAQGN
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCC
ALPPGGYPFAIYLNKQQVDNKIIRFTAKEGAAAQPCLTVEDLLNYGVKLPDTLTPGSCVD
CCCCCCCEEEEEEEHHHHCCEEEEEEECCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCEE
VAATVKGSTLSFDPAVQQIDLSVPQVMLVQHARGDIPTTLYDQGINAAFSNYSLNYNRNS
EEEEECCCEEECCCCHHEECCCCCHHHHHHHHCCCCCCHHHHCCCCCEECCEEEECCCCC
SQQQSGQNSEYTFLSLNNGLNLWRWRLRNNMTMNKISGQSAQWDNIATWAEMDIASWRSR
CHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
VQLGQASTNNTVFNSIQFRGVQLSSVDDMLPESLRGYAPVVRGIASTNARVDIRQNGYVV
HEECCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEE
YSTNVAPGAFEIRDIYPHSNSGDLQVTVNEADGTRKHFSVSYSSIANMLREGIWNYQLTA
EECCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHCCCCEEEEC
GRYQSGDTRYTPNFMQGTLARGIAYGLTPYGGLIVADNYRAAALGMAKNMGEWGAISIDG
CEECCCCCEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEHHHHHCCCCCCEEEECC
AYSDTTLANGERARGQSYRFLYSKSLNQMGTNVQLAGYRYATSGYYDFADAVEERSRWRQ
CCCCCEECCCCCCCCCCEEEEEHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHH
GIYENNYYNPGDGQTGIPDLDNRNRHRVYTPRYANKRERVDVSINQQLWQGATLYANVSS
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECHHHHCCEEEEEECCC
QSYWGGGGRDRTVQLGYNDAIKSISYGVYLQDTRSQYGYADRSINLSVSIPLNWGRDNHS
CCCCCCCCCCCEEEECCHHHHHHEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCC
ASLNVSGTHSRQSGDSYNTGISGTALSDQRLNYALSTGHTASAGQSSALNLDYRGAYGNL
EEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCC
DGSYSYSNSYNQLGLGLSGGVLLHSGGVTLSQPLQNTVILVEAKHASGVRLDNQSGVAID
CCCEECCCCCCEECCCCCCCEEEEECCCEECCCCCCEEEEEEECCCCCEEEECCCCEEEC
PFGYAVVPSATPYRFNAVALHTQDFEPGLDVPVASRQVVPTEKAIVKVRFDTFYGVSLLI
CCCEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEEECCHHCEEEEE
HSHLNGGGYPAVGASVFNQQGRNSGTVGLNGDLYVSGAQPGERLTLRWGNQPGQQCTLVL
EECCCCCCCCCCCHHHHHHCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCCCEEEEEC
PSDLSMRNTTVGYQELSLPCQIQ
CCCCCCCCCCCCHHHCCCCEECC
>Mature Secondary Structure 
AQHQRTGSLKTEPTRWMCLAFAAGSLSLGCSASAWAEFNMSFVHGSENVNAAQAVAQGN
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCC
ALPPGGYPFAIYLNKQQVDNKIIRFTAKEGAAAQPCLTVEDLLNYGVKLPDTLTPGSCVD
CCCCCCCEEEEEEEHHHHCCEEEEEEECCCCCCCCCEEHHHHHHCCCCCCCCCCCCCCEE
VAATVKGSTLSFDPAVQQIDLSVPQVMLVQHARGDIPTTLYDQGINAAFSNYSLNYNRNS
EEEEECCCEEECCCCHHEECCCCCHHHHHHHHCCCCCCHHHHCCCCCEECCEEEECCCCC
SQQQSGQNSEYTFLSLNNGLNLWRWRLRNNMTMNKISGQSAQWDNIATWAEMDIASWRSR
CHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
VQLGQASTNNTVFNSIQFRGVQLSSVDDMLPESLRGYAPVVRGIASTNARVDIRQNGYVV
HEECCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEE
YSTNVAPGAFEIRDIYPHSNSGDLQVTVNEADGTRKHFSVSYSSIANMLREGIWNYQLTA
EECCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHCCCCEEEEC
GRYQSGDTRYTPNFMQGTLARGIAYGLTPYGGLIVADNYRAAALGMAKNMGEWGAISIDG
CEECCCCCEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEHHHHHCCCCCCEEEECC
AYSDTTLANGERARGQSYRFLYSKSLNQMGTNVQLAGYRYATSGYYDFADAVEERSRWRQ
CCCCCEECCCCCCCCCCEEEEEHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHH
GIYENNYYNPGDGQTGIPDLDNRNRHRVYTPRYANKRERVDVSINQQLWQGATLYANVSS
CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECHHHHCCEEEEEECCC
QSYWGGGGRDRTVQLGYNDAIKSISYGVYLQDTRSQYGYADRSINLSVSIPLNWGRDNHS
CCCCCCCCCCCEEEECCHHHHHHEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCC
ASLNVSGTHSRQSGDSYNTGISGTALSDQRLNYALSTGHTASAGQSSALNLDYRGAYGNL
EEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCC
DGSYSYSNSYNQLGLGLSGGVLLHSGGVTLSQPLQNTVILVEAKHASGVRLDNQSGVAID
CCCEECCCCCCEECCCCCCCEEEEECCCEECCCCCCEEEEEEECCCCCEEEECCCCEEEC
PFGYAVVPSATPYRFNAVALHTQDFEPGLDVPVASRQVVPTEKAIVKVRFDTFYGVSLLI
CCCEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCEECCCCEEEEEEEECCHHCEEEEE
HSHLNGGGYPAVGASVFNQQGRNSGTVGLNGDLYVSGAQPGERLTLRWGNQPGQQCTLVL
EECCCCCCCCCCCHHHHHHCCCCCCEEECCCCEEEECCCCCCEEEEEECCCCCCEEEEEC
PSDLSMRNTTVGYQELSLPCQIQ
CCCCCCCCCCCCHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]