Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

Click here to switch to the map view.

The map label for this gene is yajQ [C]

Identifier: 238919005

GI number: 238919005

Start: 1067551

End: 1068042

Strand: Direct

Name: yajQ [C]

Synonym: NT01EI_1072

Alternate gene names: 238919005

Gene position: 1067551-1068042 (Clockwise)

Preceding gene: 238918997

Following gene: 238919009

Centisome position: 28.0

GC content: 56.1

Gene sequence:

>492_bases
ATGCCGTCATTCGATATCGTATCCGAAGTGGATCTGCAGGAAGTCCGTAACGCCGTCGAAAACGCCACGCGTGAGCTGGC
GTCGCGCTGGGATTTTCGTAATGTGGAAGCCAGCGTTGAGCTGAATGAGAAGAACGAAACCATCAAGCTCACCACCATTT
CCGATTTTCAGGTCAAGCAGCTGGTCGATATTCTGCGCGAGAAGCTGGTCAAGCGCGGCATTGAGGCTGGCGCACTGGAG
ATCCCGGAGGAGTGTGAGCACAGCGGCAAGCTTTACAGCGTAGAGGCGAAGCTGCAGAAAGGTATCGATAGCGTCATGGC
GAAGAAGCTGGTGAAGCTGATTAAAGACAGCAAGCTGAAGGTGCAGACGCAGATCCAGGGCGAACAGCTGCGCGTCACCG
GTAAGTCACGCGACGATCTACAGGGGGCGATGGCGCTGGTGCGCGGCGCCGATCTGGGCCAGCCATTCCAGTTTAATAAC
TTCCGTGACTGA

Upstream 100 bases:

>100_bases
GGTCGGTGTCCCGTCACCGTTAGCGGCGACAGCCCGGCGATCTTGCATCATGGCGCTGAGCCGTTATCATGCACGGCATT
ATAGCGAGAGGAGAAGTAGC

Downstream 100 bases:

>100_bases
TCCCTGCGGGGCAGGCTCTGGCTTGCCCTGAGGGGTTACTCTCCCGGTTCTGCGGCGCGTTGCAGGAACGTTTCCAACGC
CTCGCGGCTGGTCATCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MPSFDIVSEVDLQEVRNAVENATRELASRWDFRNVEASVELNEKNETIKLTTISDFQVKQLVDILREKLVKRGIEAGALE
IPEECEHSGKLYSVEAKLQKGIDSVMAKKLVKLIKDSKLKVQTQIQGEQLRVTGKSRDDLQGAMALVRGADLGQPFQFNN
FRD

Sequences:

>Translated_163_residues
MPSFDIVSEVDLQEVRNAVENATRELASRWDFRNVEASVELNEKNETIKLTTISDFQVKQLVDILREKLVKRGIEAGALE
IPEECEHSGKLYSVEAKLQKGIDSVMAKKLVKLIKDSKLKVQTQIQGEQLRVTGKSRDDLQGAMALVRGADLGQPFQFNN
FRD
>Mature_162_residues
PSFDIVSEVDLQEVRNAVENATRELASRWDFRNVEASVELNEKNETIKLTTISDFQVKQLVDILREKLVKRGIEAGALEI
PEECEHSGKLYSVEAKLQKGIDSVMAKKLVKLIKDSKLKVQTQIQGEQLRVTGKSRDDLQGAMALVRGADLGQPFQFNNF
RD

Specific function: Unknown

COG id: COG1666

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0234 family

Homologues:

Organism=Escherichia coli, GI87081737, Length=163, Percent_Identity=71.1656441717791, Blast_Score=242, Evalue=8e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1072_EDWI9 (C5BCJ0)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002932519.1
- GeneID:   7960658
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_1072
- OMA:   LQFTNYR
- ProtClustDB:   CLSK2812943
- HAMAP:   MF_00632
- InterPro:   IPR007551

Pfam domain/function: PF04461 DUF520

EC number: NA

Molecular weight: Translated: 18402; Mature: 18271

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFDIVSEVDLQEVRNAVENATRELASRWDFRNVEASVELNEKNETIKLTTISDFQVKQ
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCHHHHH
LVDILREKLVKRGIEAGALEIPEECEHSGKLYSVEAKLQKGIDSVMAKKLVKLIKDSKLK
HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
VQTQIQGEQLRVTGKSRDDLQGAMALVRGADLGQPFQFNNFRD
EEEEECCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PSFDIVSEVDLQEVRNAVENATRELASRWDFRNVEASVELNEKNETIKLTTISDFQVKQ
CCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCHHHHH
LVDILREKLVKRGIEAGALEIPEECEHSGKLYSVEAKLQKGIDSVMAKKLVKLIKDSKLK
HHHHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCEE
VQTQIQGEQLRVTGKSRDDLQGAMALVRGADLGQPFQFNNFRD
EEEEECCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA