Click here to switch to the map view.

The map label for this gene is rpsF [H]

Identifier: 238917875

GI number: 238917875

Start: 2020432

End: 2020719

Strand: Reverse

Name: rpsF [H]

Synonym: EUBELI_01956

Alternate gene names: 238917875

Gene position: 2020719-2020432 (Counterclockwise)

Preceding gene: 238917876

Following gene: 238917874

Centisome position: 94.24

GC content: 38.54

Gene sequence:

>288_bases
ATGAATAAGTATGAATTAGCATTAGTTGTTAGCGCAAACGTCGAGGATGAAGTAAGAACAGCTACTATCGAGAAGGTTAA
TGAGTTAATTACTCGTTTCGGTGGTACTATTACAGATCCAGGCACAAGCGAGAAGAAGAAGCTTGCATACGATATCCAGC
ATATGAGCGAAGGATTCTATAGTTTCATTAAGTTTGAAGCAGAAGCTGCTGCTCCAGCTGAGATTGAAAGCAGAATCCGT
ATCATGGATAATGTATTAAGATTCTTAATCGTTAAAGACGGAGAGTAA

Upstream 100 bases:

>100_bases
GATTTTGTCTTGTGATATATTTTTAATCCTTGTTCCTTCATTTACATTTATATGTATAAGGATAGAAGGGACCAAAAGAC
CAGAAGGAGGTGCGACGTAG

Downstream 100 bases:

>100_bases
TTTATTAATCCCGATTTTTAAAGATGACGTTTGACTTGCAACTCTTTATAGAAGAGGAGATAAAGTATGAACAAAGTTAT
TTTAATGGGAAGATTGACAA

Product: small subunit ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MNKYELALVVSANVEDEVRTATIEKVNELITRFGGTITDPGTSEKKKLAYDIQHMSEGFYSFIKFEAEAAAPAEIESRIR
IMDNVLRFLIVKDGE

Sequences:

>Translated_95_residues
MNKYELALVVSANVEDEVRTATIEKVNELITRFGGTITDPGTSEKKKLAYDIQHMSEGFYSFIKFEAEAAAPAEIESRIR
IMDNVLRFLIVKDGE
>Mature_95_residues
MNKYELALVVSANVEDEVRTATIEKVNELITRFGGTITDPGTSEKKKLAYDIQHMSEGFYSFIKFEAEAAAPAEIESRIR
IMDNVLRFLIVKDGE

Specific function: Binds together with S18 to 16S ribosomal RNA [H]

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000529
- InterPro:   IPR020814
- InterPro:   IPR014717 [H]

Pfam domain/function: PF01250 Ribosomal_S6 [H]

EC number: NA

Molecular weight: Translated: 10714; Mature: 10714

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYELALVVSANVEDEVRTATIEKVNELITRFGGTITDPGTSEKKKLAYDIQHMSEGFY
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
SFIKFEAEAAAPAEIESRIRIMDNVLRFLIVKDGE
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MNKYELALVVSANVEDEVRTATIEKVNELITRFGGTITDPGTSEKKKLAYDIQHMSEGFY
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
SFIKFEAEAAAPAEIESRIRIMDNVLRFLIVKDGE
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA