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The map label for this gene is araC [H]

Identifier: 238917768

GI number: 238917768

Start: 1910839

End: 1911669

Strand: Direct

Name: araC [H]

Synonym: EUBELI_01849

Alternate gene names: 238917768

Gene position: 1910839-1911669 (Clockwise)

Preceding gene: 238917754

Following gene: 238917772

Centisome position: 89.12

GC content: 37.67

Gene sequence:

>831_bases
ATGGATTTTAAGGATAAAAGCCGACCACTGATTGTCGGTAGCTGCGGAATCTATCGTTTGTCCGAGCACCCAAAGATACC
AACCTATCGCCCAAGAGGACGTGTTGATTTTCAGATTATATATATTGCAGCCGGATGCGGACATTTTCATTTTGATACTG
TTGATAACGAAACAATTGTTCCCGCTGGTAACATTGTCATATTCCGCCCAAAAGAGCTTCAGAAATATGAATACTATGGG
GAAGATAAGACAGAAGTCTACTGGATTCATTTTACTGGAAGTGATGTAAAAAACATCTTAAGAAAATATGGTTTCCCAGA
TAACGAGAGAATATTCCCAGTTGGTACATCCATGGAATATGAGCGTGTATTTAAGAGAATTATTATAGAATTACAACGTT
GTCAGGATAACTACGAAGAAATGCTCACATTATTGCTCCGTCATCTTCTGATCATATTCCAACGTGAGCTTACCAGAGAG
CATGTTTTAAAAAATGAATATCTCAACCACGAGATGGATACCGCCGTGACATATTTTAACGAAAATTATAACCGTGATAT
CAATATAGAAGAGTATGCTACATCCAAGGGGATGAGCGTCAGTTGGTTCATAAGAAACTTCAAGAAGTTCACAGGTTCTA
CTCCTATGCAGTTTATTGTTGCGCTCCGTGTCAACAACGCACAGGTTCTACTAGAAGCAACAAATTATTCTATTAATGAA
ATATCAAAAATTGTGGGATATGATAACCAGCTATATTTCAGCCGATTATTTCATAAGTTGAAGGGGGACTCTCCTAGAGA
TTATCGAAAAACCAGAAAGTCGGAAATATAA

Upstream 100 bases:

>100_bases
GAATAGACAAAATATGCACAAAATGATACAATAATCCCATCAATCAGAAAAGGAGTGCTGCCCTATGTACATGAACACCG
GTTATTTGAACCATTCACAT

Downstream 100 bases:

>100_bases
AACTCGTGTAGTGTCCACATAGTAGTCATAGTACACGCAAGAGAAGTAATTACAGTATTATGACTGTTTTTTACAGGTGT
AAGAATAGAGAATTGTTTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MDFKDKSRPLIVGSCGIYRLSEHPKIPTYRPRGRVDFQIIYIAAGCGHFHFDTVDNETIVPAGNIVIFRPKELQKYEYYG
EDKTEVYWIHFTGSDVKNILRKYGFPDNERIFPVGTSMEYERVFKRIIIELQRCQDNYEEMLTLLLRHLLIIFQRELTRE
HVLKNEYLNHEMDTAVTYFNENYNRDINIEEYATSKGMSVSWFIRNFKKFTGSTPMQFIVALRVNNAQVLLEATNYSINE
ISKIVGYDNQLYFSRLFHKLKGDSPRDYRKTRKSEI

Sequences:

>Translated_276_residues
MDFKDKSRPLIVGSCGIYRLSEHPKIPTYRPRGRVDFQIIYIAAGCGHFHFDTVDNETIVPAGNIVIFRPKELQKYEYYG
EDKTEVYWIHFTGSDVKNILRKYGFPDNERIFPVGTSMEYERVFKRIIIELQRCQDNYEEMLTLLLRHLLIIFQRELTRE
HVLKNEYLNHEMDTAVTYFNENYNRDINIEEYATSKGMSVSWFIRNFKKFTGSTPMQFIVALRVNNAQVLLEATNYSINE
ISKIVGYDNQLYFSRLFHKLKGDSPRDYRKTRKSEI
>Mature_276_residues
MDFKDKSRPLIVGSCGIYRLSEHPKIPTYRPRGRVDFQIIYIAAGCGHFHFDTVDNETIVPAGNIVIFRPKELQKYEYYG
EDKTEVYWIHFTGSDVKNILRKYGFPDNERIFPVGTSMEYERVFKRIIIELQRCQDNYEEMLTLLLRHLLIIFQRELTRE
HVLKNEYLNHEMDTAVTYFNENYNRDINIEEYATSKGMSVSWFIRNFKKFTGSTPMQFIVALRVNNAQVLLEATNYSINE
ISKIVGYDNQLYFSRLFHKLKGDSPRDYRKTRKSEI

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=235, Percent_Identity=25.1063829787234, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787987, Length=272, Percent_Identity=23.8970588235294, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32780; Mature: 32780

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFKDKSRPLIVGSCGIYRLSEHPKIPTYRPRGRVDFQIIYIAAGCGHFHFDTVDNETIV
CCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCEEE
PAGNIVIFRPKELQKYEYYGEDKTEVYWIHFTGSDVKNILRKYGFPDNERIFPVGTSMEY
CCCCEEEECCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCCCCEEEEECCCCCH
ERVFKRIIIELQRCQDNYEEMLTLLLRHLLIIFQRELTREHVLKNEYLNHEMDTAVTYFN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEC
ENYNRDINIEEYATSKGMSVSWFIRNFKKFTGSTPMQFIVALRVNNAQVLLEATNYSINE
CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEECCEEEEEEECCCCHHH
ISKIVGYDNQLYFSRLFHKLKGDSPRDYRKTRKSEI
HHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDFKDKSRPLIVGSCGIYRLSEHPKIPTYRPRGRVDFQIIYIAAGCGHFHFDTVDNETIV
CCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCEEE
PAGNIVIFRPKELQKYEYYGEDKTEVYWIHFTGSDVKNILRKYGFPDNERIFPVGTSMEY
CCCCEEEECCHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCCCCEEEEECCCCCH
ERVFKRIIIELQRCQDNYEEMLTLLLRHLLIIFQRELTREHVLKNEYLNHEMDTAVTYFN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEC
ENYNRDINIEEYATSKGMSVSWFIRNFKKFTGSTPMQFIVALRVNNAQVLLEATNYSINE
CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEECCEEEEEEECCCCHHH
ISKIVGYDNQLYFSRLFHKLKGDSPRDYRKTRKSEI
HHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3902795 [H]