Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 238917731

GI number: 238917731

Start: 1873212

End: 1874423

Strand: Reverse

Name: yebA [H]

Synonym: EUBELI_01811

Alternate gene names: 238917731

Gene position: 1874423-1873212 (Counterclockwise)

Preceding gene: 238917732

Following gene: 238917730

Centisome position: 87.42

GC content: 40.35

Gene sequence:

>1212_bases
ATGGAGAAAGCACTGTTTTGTAACAATTTAATAAAGAAAATAACAGCGGCACTCATGATTGTAATGCTGCTTATACCGTA
TTGTTTTGCACAGGTTACATTTGGAGATAATAAATCGGATCTGAAGAATGCCCAGAACCAGCAGAATGATATACAGAATA
AAAAGAAAGAAACAGAAGACAAGATTGCTCAGCTTAAGGCACAGAGTTCAGACCTTACATCTCTTATTCAGGGACTGGAT
GCCCAGATGGGAGAATTGTCAGCGTCATTAGATGATATTAATACCCAGATTGCAACATTAGAGGCTGAGATTGAGGAGAC
ACAGGCACAGCTTGAGCAGGCTGAGGCTGATAAGGAAAGCCAGTATGAGGCTATGAAGCTTCGAATCCAGTTTATGTATG
AGCATAATGATTATACATATGTTGAAGTGCTTTTATCATCACAGAGTATGGCGGATATGCTTAATAAATTTGAGTATATT
AATAAGATATCAGAGTATGACAGACAGATGCTTGAGGAATATCAGTCAACGATTAATCTTATATCATCTTCTAAAGTAAA
GCTTGAAGAAGATAAAGAGACTCTGACTGCCAGTCAGGAGGCACTTCAGGCACAGGTTGATGCACTTGAGGTTGTCCAGA
ATGAGAAGAATGCCCAGCTTAATGCTTTGAGTAAGAATACGGCTGATCAGGTGGCTTATAAGAAACAGCTCGAAGCTGAC
GAGAAGAAGCTCGATGCAGAGATTGCTTCTATAACAGCCAAGATTAAGGCAGAGGAAGCAAGCGGAGTTACTCCGTCTAA
CAGATATGATGGCGGAACTTTCAAATGGCCAACAACAAGTACAAGAATAACTTCTCCATACGGAGATACATCTGACAGAA
CTTCACCGCATAAAGGTGTGGATATTGGAGCGGTCAGGGCAGGAGTTTCAGGTGATCCTGTATATGCAGCTTATGACGGT
AAAGTTGTTATTGCACACAGACAGAGCGAGGGTTACTCAACAGCGGGTAATTATGTGATGATTTATCATGGTAATGGACT
GTATACGAGATACCTGCATCTTGATAGTTTAAATGTAACAGTAGGAGCCCAGGTGACGAAAGGACAGAAGCTTGGTGTTA
TGGGTAATACGGGTAATTCATTTGGCGCACATCTGCATTTTGATGTAAGGCTCAATGATTCATATGTTAATCCTATGCCA
TATTTTAAATAA

Upstream 100 bases:

>100_bases
ATGTATAGTTTCGGATAGTTTTTGGGGGCTTTTGCAAACGGATGCAGAAGTCCCTGTTTGTTTTTAGAAAACATTTTAAT
TATGGTAAAGGAGTGGCTGT

Downstream 100 bases:

>100_bases
ATAATTCAACTTAATAGGAGGACTCAATGGAATATGATAATAACAGACCTTTTTCTTCGGAAGGGGCCGCACAGGAACGA
AAGAGAAAACATGCTTTAGG

Product: lysostaphin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MEKALFCNNLIKKITAALMIVMLLIPYCFAQVTFGDNKSDLKNAQNQQNDIQNKKKETEDKIAQLKAQSSDLTSLIQGLD
AQMGELSASLDDINTQIATLEAEIEETQAQLEQAEADKESQYEAMKLRIQFMYEHNDYTYVEVLLSSQSMADMLNKFEYI
NKISEYDRQMLEEYQSTINLISSSKVKLEEDKETLTASQEALQAQVDALEVVQNEKNAQLNALSKNTADQVAYKKQLEAD
EKKLDAEIASITAKIKAEEASGVTPSNRYDGGTFKWPTTSTRITSPYGDTSDRTSPHKGVDIGAVRAGVSGDPVYAAYDG
KVVIAHRQSEGYSTAGNYVMIYHGNGLYTRYLHLDSLNVTVGAQVTKGQKLGVMGNTGNSFGAHLHFDVRLNDSYVNPMP
YFK

Sequences:

>Translated_403_residues
MEKALFCNNLIKKITAALMIVMLLIPYCFAQVTFGDNKSDLKNAQNQQNDIQNKKKETEDKIAQLKAQSSDLTSLIQGLD
AQMGELSASLDDINTQIATLEAEIEETQAQLEQAEADKESQYEAMKLRIQFMYEHNDYTYVEVLLSSQSMADMLNKFEYI
NKISEYDRQMLEEYQSTINLISSSKVKLEEDKETLTASQEALQAQVDALEVVQNEKNAQLNALSKNTADQVAYKKQLEAD
EKKLDAEIASITAKIKAEEASGVTPSNRYDGGTFKWPTTSTRITSPYGDTSDRTSPHKGVDIGAVRAGVSGDPVYAAYDG
KVVIAHRQSEGYSTAGNYVMIYHGNGLYTRYLHLDSLNVTVGAQVTKGQKLGVMGNTGNSFGAHLHFDVRLNDSYVNPMP
YFK
>Mature_403_residues
MEKALFCNNLIKKITAALMIVMLLIPYCFAQVTFGDNKSDLKNAQNQQNDIQNKKKETEDKIAQLKAQSSDLTSLIQGLD
AQMGELSASLDDINTQIATLEAEIEETQAQLEQAEADKESQYEAMKLRIQFMYEHNDYTYVEVLLSSQSMADMLNKFEYI
NKISEYDRQMLEEYQSTINLISSSKVKLEEDKETLTASQEALQAQVDALEVVQNEKNAQLNALSKNTADQVAYKKQLEAD
EKKLDAEIASITAKIKAEEASGVTPSNRYDGGTFKWPTTSTRITSPYGDTSDRTSPHKGVDIGAVRAGVSGDPVYAAYDG
KVVIAHRQSEGYSTAGNYVMIYHGNGLYTRYLHLDSLNVTVGAQVTKGQKLGVMGNTGNSFGAHLHFDVRLNDSYVNPMP
YFK

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=134, Percent_Identity=38.8059701492537, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI87082174, Length=196, Percent_Identity=34.1836734693878, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87082297, Length=435, Percent_Identity=24.1379310344828, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1789099, Length=129, Percent_Identity=34.1085271317829, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 44809; Mature: 44809

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKALFCNNLIKKITAALMIVMLLIPYCFAQVTFGDNKSDLKNAQNQQNDIQNKKKETED
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
KIAQLKAQSSDLTSLIQGLDAQMGELSASLDDINTQIATLEAEIEETQAQLEQAEADKES
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHH
QYEAMKLRIQFMYEHNDYTYVEVLLSSQSMADMLNKFEYINKISEYDRQMLEEYQSTINL
HHHHHEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISSSKVKLEEDKETLTASQEALQAQVDALEVVQNEKNAQLNALSKNTADQVAYKKQLEAD
HHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCHHHHHHHHHHHHHH
EKKLDAEIASITAKIKAEEASGVTPSNRYDGGTFKWPTTSTRITSPYGDTSDRTSPHKGV
HHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCC
DIGAVRAGVSGDPVYAAYDGKVVIAHRQSEGYSTAGNYVMIYHGNGLYTRYLHLDSLNVT
CHHHEECCCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECCEEE
VGAQVTKGQKLGVMGNTGNSFGAHLHFDVRLNDSYVNPMPYFK
ECCEEECCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MEKALFCNNLIKKITAALMIVMLLIPYCFAQVTFGDNKSDLKNAQNQQNDIQNKKKETED
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
KIAQLKAQSSDLTSLIQGLDAQMGELSASLDDINTQIATLEAEIEETQAQLEQAEADKES
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHH
QYEAMKLRIQFMYEHNDYTYVEVLLSSQSMADMLNKFEYINKISEYDRQMLEEYQSTINL
HHHHHEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISSSKVKLEEDKETLTASQEALQAQVDALEVVQNEKNAQLNALSKNTADQVAYKKQLEAD
HHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCHHHHHHHHHHHHHH
EKKLDAEIASITAKIKAEEASGVTPSNRYDGGTFKWPTTSTRITSPYGDTSDRTSPHKGV
HHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCC
DIGAVRAGVSGDPVYAAYDGKVVIAHRQSEGYSTAGNYVMIYHGNGLYTRYLHLDSLNVT
CHHHEECCCCCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECCEEE
VGAQVTKGQKLGVMGNTGNSFGAHLHFDVRLNDSYVNPMPYFK
ECCEEECCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]