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The map label for this gene is ysgA [H]

Identifier: 238917600

GI number: 238917600

Start: 1738296

End: 1739135

Strand: Reverse

Name: ysgA [H]

Synonym: EUBELI_01679

Alternate gene names: 238917600

Gene position: 1739135-1738296 (Counterclockwise)

Preceding gene: 238917601

Following gene: 238917599

Centisome position: 81.11

GC content: 40.95

Gene sequence:

>840_bases
GTGCATTACTTTCTAAGTAATGCATGGCAGAAAGGTAACCTCATAATGATAACCAGTACGAGCAGTTCACAGGTAAAGCA
TGTTATATCATTGCTTTCTAAGGCCAGGGAAAGAAAGAAGAATAAAGAATATGTTGTAGAGGGAGTCCGTATGGTATCTG
AGGTGCCGGCAGATTTGCTGGTGAAGATATATATGTCTGAAAGATTTCATAGTAACAATCCTGAGTATGTGCATGAGCTG
GTTAAGAAGCAGGGGATTTCTTCTGACAGTATTGAGATTGTCGCCGATAATGTATTTGACAGAATGTCACAGACACAGAC
ACCACAGGGGATTATGGCGGTTGTAAGAATGAAGGACAGCAGTATTTCAGATATGCTTACCGACAATCCGTTGCTGATTC
TTGTTGAGAATCTTCAGGATCCGGGTAATCTGGGAACTATATTAAGGATGGGTGAAGGTGCAGGCGTTACCGGAGTTATT
ATGAGCTCTAATACTGTGGATATATATAATCCTAAGACAATAAGGTCAACAATGGGTTCTATATTCAGAGTGCCATTTGT
TTATGTGCAGGATTTTAGCGATGCAGTTTCACAGTGTAAGAATGCCGGAATTAAGGTATATGCTGCACATCTTGACGGAA
AGAATACATATCTTGGTGAAGATTACAGGGAAGGAACCGCATTTCTAATAGGCAATGAGGGGAATGGACTTACAGAGGAT
ATCACTAAGCAGGCAGATACACTTATAAGAATTCCGATGCAGGGAGAGGTTGAATCTCTTAACGCGGCAATAGCATGTAC
AATTCTTACATACGAAGCTGTCAGACAGAGAAGTGTGTAG

Upstream 100 bases:

>100_bases
AACAGACTTGTAGCATACAGGGATGGTAAGTTTGTTGATTATGATATTGATGAAGCACTTGCCATGACTAAGGATATTAA
TGATTATGAATTTAATATAA

Downstream 100 bases:

>100_bases
ATAACCAACTATATATATGGTCATATACTATATTTTGCAAAATGAATTTAATAAACAAACCCGCAAACCCGCTCATAGAG
CGGGTTTTAACATATTTGAC

Product: TrmH family RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MHYFLSNAWQKGNLIMITSTSSSQVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLLVKIYMSERFHSNNPEYVHEL
VKKQGISSDSIEIVADNVFDRMSQTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVI
MSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTED
ITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQRSV

Sequences:

>Translated_279_residues
MHYFLSNAWQKGNLIMITSTSSSQVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLLVKIYMSERFHSNNPEYVHEL
VKKQGISSDSIEIVADNVFDRMSQTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVI
MSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTED
ITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQRSV
>Mature_279_residues
MHYFLSNAWQKGNLIMITSTSSSQVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLLVKIYMSERFHSNNPEYVHEL
VKKQGISSDSIEIVADNVFDRMSQTQTPQGIMAVVRMKDSSISDMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVI
MSSNTVDIYNPKTIRSTMGSIFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTED
ITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQRSV

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=313, Percent_Identity=27.1565495207668, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI1790623, Length=208, Percent_Identity=28.8461538461538, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1790083, Length=166, Percent_Identity=31.9277108433735, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30908; Mature: 30908

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYFLSNAWQKGNLIMITSTSSSQVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLL
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHH
VKIYMSERFHSNNPEYVHELVKKQGISSDSIEIVADNVFDRMSQTQTPQGIMAVVRMKDS
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCHHHEEEEEECCC
SISDMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGS
CHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCEEEECCCHHHHHHHHH
IFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTED
HHHCHHHEEHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHH
ITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQRSV
HHHHCCCEEECCCCCCHHHHCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHYFLSNAWQKGNLIMITSTSSSQVKHVISLLSKARERKKNKEYVVEGVRMVSEVPADLL
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHH
VKIYMSERFHSNNPEYVHELVKKQGISSDSIEIVADNVFDRMSQTQTPQGIMAVVRMKDS
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCCHHHEEEEEECCC
SISDMLTDNPLLILVENLQDPGNLGTILRMGEGAGVTGVIMSSNTVDIYNPKTIRSTMGS
CHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCEEEECCCHHHHHHHHH
IFRVPFVYVQDFSDAVSQCKNAGIKVYAAHLDGKNTYLGEDYREGTAFLIGNEGNGLTED
HHHCHHHEEHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHH
ITKQADTLIRIPMQGEVESLNAAIACTILTYEAVRQRSV
HHHHCCCEEECCCCCCHHHHCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]