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The map label for this gene is ybaZ [C]

Identifier: 238917573

GI number: 238917573

Start: 1711058

End: 1711684

Strand: Reverse

Name: ybaZ [C]

Synonym: EUBELI_01652

Alternate gene names: 238917573

Gene position: 1711684-1711058 (Counterclockwise)

Preceding gene: 238917574

Following gene: 238917572

Centisome position: 79.83

GC content: 44.02

Gene sequence:

>627_bases
ATGACGACTAGGGAAGAAGCACTCGAATATGGACTTTCTTTTCCAGATACTTATCAGGAAGCACCGTTTCATGATCAGAA
CTGGCAGCTGGTAAGAGTTAAAGGATGCAAGAAAGCATTTTTATGGACATACGAGCGTGACGGATATATTAATCTTAATG
TGAAAGTTTCACCTGAATGGCGGGATTTGTGGAGGAGTACATATTCTTCTGTAATTGCGGGCTGGCATCAGAATAAGGAA
CACTGGAATACTATTATTCTTGATGGAACTGTTCCTGATGAAGATATCAGACGCATGATTGCGGAAAGCTATGACCTTGT
ATCTTACAGCCCGACCAAGAGGATATATGAAGCTGTTAAGAAGATTCCTAGAGGACAGGTTGCAACATATGGACAGATTG
CAGAGCTTGCAGGCGACAGAAAGATGGCGCGTGCAGTTGGCAATGCACTTCATAAGAACCCGGATCCGTTACATATTCCG
TGCTACAGAGTAGTTAATTCGAAGGGAGAGCTTGCCGGGGAATTCGCATTTGGAGGAGCCGGAAAGCAGGCGGCACTTCT
TATGGCAGACGGAATAGAGGTTGTTAATGGCAGGGTTGACCTGAAAAAATATGGAATGAAATTCTGA

Upstream 100 bases:

>100_bases
TCAAGAAGATGGAAGCAATCCTTAAGAAATATATTGATGAGGGCAAGCTTGGAATGTCTTCTGGCGAAGGCTTTTACAAA
TATAATTAAGGACTGATGAT

Downstream 100 bases:

>100_bases
ATTACTATAATGATATATGAAATAATGTCGATATATATTAGGCATGGAAGGCGCATTTATTCAATGGATTGAAGCTGTTG
GATGGATGTGCCTTTTTTGC

Product: methylated-DNA-[protein]-cysteine S-methyltransferase

Products: NA

Alternate protein names: Probable methylated-DNA--protein-cysteine methyltransferase; O-6-methylbase-DNA-alkyltransferase; Endonuclease V; Deoxyinosine 3'endonuclease; Deoxyribonuclease V; DNase V [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTTREEALEYGLSFPDTYQEAPFHDQNWQLVRVKGCKKAFLWTYERDGYINLNVKVSPEWRDLWRSTYSSVIAGWHQNKE
HWNTIILDGTVPDEDIRRMIAESYDLVSYSPTKRIYEAVKKIPRGQVATYGQIAELAGDRKMARAVGNALHKNPDPLHIP
CYRVVNSKGELAGEFAFGGAGKQAALLMADGIEVVNGRVDLKKYGMKF

Sequences:

>Translated_208_residues
MTTREEALEYGLSFPDTYQEAPFHDQNWQLVRVKGCKKAFLWTYERDGYINLNVKVSPEWRDLWRSTYSSVIAGWHQNKE
HWNTIILDGTVPDEDIRRMIAESYDLVSYSPTKRIYEAVKKIPRGQVATYGQIAELAGDRKMARAVGNALHKNPDPLHIP
CYRVVNSKGELAGEFAFGGAGKQAALLMADGIEVVNGRVDLKKYGMKF
>Mature_207_residues
TTREEALEYGLSFPDTYQEAPFHDQNWQLVRVKGCKKAFLWTYERDGYINLNVKVSPEWRDLWRSTYSSVIAGWHQNKEH
WNTIILDGTVPDEDIRRMIAESYDLVSYSPTKRIYEAVKKIPRGQVATYGQIAELAGDRKMARAVGNALHKNPDPLHIPC
YRVVNSKGELAGEFAFGGAGKQAALLMADGIEVVNGRVDLKKYGMKF

Specific function: Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. Acts in DNA repair [H]

COG id: COG0350

COG function: function code L; Methylated DNA-protein cysteine methyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the endonuclease V family [H]

Homologues:

Organism=Escherichia coli, GI1786659, Length=93, Percent_Identity=36.5591397849462, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007581
- InterPro:   IPR014048
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01035 DNA_binding_1; PF04493 Endonuclease_5 [H]

EC number: =3.1.21.7 [H]

Molecular weight: Translated: 23673; Mature: 23542

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTREEALEYGLSFPDTYQEAPFHDQNWQLVRVKGCKKAFLWTYERDGYINLNVKVSPEW
CCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCEEEEEEEECCHH
RDLWRSTYSSVIAGWHQNKEHWNTIILDGTVPDEDIRRMIAESYDLVSYSPTKRIYEAVK
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KIPRGQVATYGQIAELAGDRKMARAVGNALHKNPDPLHIPCYRVVNSKGELAGEFAFGGA
HCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCEEEEECCC
GKQAALLMADGIEVVNGRVDLKKYGMKF
CCCEEEEEECCEEEECCEECHHHCCCCC
>Mature Secondary Structure 
TTREEALEYGLSFPDTYQEAPFHDQNWQLVRVKGCKKAFLWTYERDGYINLNVKVSPEW
CCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCEEEEEEEECCHH
RDLWRSTYSSVIAGWHQNKEHWNTIILDGTVPDEDIRRMIAESYDLVSYSPTKRIYEAVK
HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
KIPRGQVATYGQIAELAGDRKMARAVGNALHKNPDPLHIPCYRVVNSKGELAGEFAFGGA
HCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCEEEEECCC
GKQAALLMADGIEVVNGRVDLKKYGMKF
CCCEEEEEECCEEEECCEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA