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The map label for this gene is lytR [H]

Identifier: 238917539

GI number: 238917539

Start: 1673876

End: 1675486

Strand: Direct

Name: lytR [H]

Synonym: EUBELI_01618

Alternate gene names: 238917539

Gene position: 1673876-1675486 (Clockwise)

Preceding gene: 238917521

Following gene: 238917557

Centisome position: 78.07

GC content: 37.31

Gene sequence:

>1611_bases
ATGTCTAATTTTTTTACAAGAAGTAAAGACGATATGAAATATTTATTTAAGAATAAAGAAGAGCTTTCTAAGAAAGAACG
AAAAAGAAAAAGGCGTGGCTGGGGTACACTTATTGGTCTTATATTAGTTCTGATACAGCTTATTGTATCGGGATTACTTT
TATTTAATATATTTAAGTTAGATATTCTTCCATTGAAGTATTTAATTGCGGTCAACGCATTTTTACTGCTGATATTCCTG
TACGATTTCACATCACAGTTTACGAAGGCTCATATTATAGGTAAGATTCTTGCAGTACTTATGTCAGGAGTGATTGTTTT
CATATACCTTGTATCATCTAAGCTTGATTCTGTCCTTAATAAACTTAATCTTCCTGAGATTAACACTGACATCGTTGATG
TAGTTGTACTGGCAGATGACAAGGCTTCCTCTTTAAATGATCTTGCCAATTACAAGTTTGCTTATAATTCAACTGCAAGC
AACGCTAATGTCAAGACAGCATTTGATTCTGTTAAATCAGAGCTTAACAAGAGCAGCCTGGAACTTGCAGAATACAAATC
ATGGGATGACCTTGTAACTGCCTTTTATGATAATACAGAGGTTCAGGCAATTGTTATGAATGATTCCATGCTTAAGGTTG
TTGCCTCACAGTATGAAGACTTTGATACCAAGGTTAAGATTATTAAGCAATACGAATATAAGAAGCTTGTTACTGTCCAG
AAATCCAACGTCAATGTAAAGAAAAATCCTTTTATTATATATGTATCAGGTATTTCAAGTGATGATGGTGATGACTTCCA
GCTTCAGAACAATGCACTTAGTGATGTCAATATAGTTGCTGTTATTAATCCTGAAACCAAGCAGATTCTTCTTGTTACAA
CCCCAAGAGATTCTTACATTAAGATTACCGGTCCTGACGGAAGAAAGGGTTACGACAAGCTTACACATGCCGGCAATTAC
GGTGTAGAAGCTTCAATGGATACTCTTCAGAATCTGTATGGAATCGATATTGATTATTATGTAAAGATTAACTTCTCTGG
ATGCATTGCTGTAGTAGATGCACTTGGTGGAATCACAATTGACTCAGAAGTAGAATTTACCTGTGGCGAAGATGCTTCTC
CTATTCCATATCATTTTGTCAAAGGACCTAATGAATGTGACGGCGAGATGGCAGTTGCATTCTCAAGAGAAAGACATGCA
TTTGCCGCCGGAGACTTCCAGCGTGGACGTAACCAGACAGCAGCTATAAAGGGTATCTTACAGAAAGCTACTTCTCCTGC
AATACTTACCAAGTACTCAGCCGTACTTGATGCTGTAAGCGATATGTTCCTTACTAATATACCGACAAGTACAATATCTG
ATCTTGTTAAGCTTCAGTTAAGTGACAGCACAGCATGGAATATTCAGACATATAGTATCGAAGGATCAACCCAGCCACCT
GCTGGACAGGGTCCTGCTTATCTCGAGATAACCGGCCTTAGAGGAGCTTCTGTTGTATATCCTTATGCGGATAGTATCAA
CACAGCAATCCAGCTTATGAGTAAGATTCAGAACGGCGATATATTCGATGTAGATGAATATGTTGACAGCCTTAACAACA
ATTCTAATTAA

Upstream 100 bases:

>100_bases
TTTTTCTTGCTTAAGATAATTAAGTTTTACTTTTTGATAAAATCATGGTAGAATGTATTCGTTATTTTTTTATTATCCTA
GTGTAATTAAGGAGTGAATT

Downstream 100 bases:

>100_bases
TCAATAAAACATAACCCCGGCAGTCCATAAGACCGCCGGGGTTATATTTTTATAATCCATCATTACAATATATAATTATC
TATAACATATGCCACACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MSNFFTRSKDDMKYLFKNKEELSKKERKRKRRGWGTLIGLILVLIQLIVSGLLLFNIFKLDILPLKYLIAVNAFLLLIFL
YDFTSQFTKAHIIGKILAVLMSGVIVFIYLVSSKLDSVLNKLNLPEINTDIVDVVVLADDKASSLNDLANYKFAYNSTAS
NANVKTAFDSVKSELNKSSLELAEYKSWDDLVTAFYDNTEVQAIVMNDSMLKVVASQYEDFDTKVKIIKQYEYKKLVTVQ
KSNVNVKKNPFIIYVSGISSDDGDDFQLQNNALSDVNIVAVINPETKQILLVTTPRDSYIKITGPDGRKGYDKLTHAGNY
GVEASMDTLQNLYGIDIDYYVKINFSGCIAVVDALGGITIDSEVEFTCGEDASPIPYHFVKGPNECDGEMAVAFSRERHA
FAAGDFQRGRNQTAAIKGILQKATSPAILTKYSAVLDAVSDMFLTNIPTSTISDLVKLQLSDSTAWNIQTYSIEGSTQPP
AGQGPAYLEITGLRGASVVYPYADSINTAIQLMSKIQNGDIFDVDEYVDSLNNNSN

Sequences:

>Translated_536_residues
MSNFFTRSKDDMKYLFKNKEELSKKERKRKRRGWGTLIGLILVLIQLIVSGLLLFNIFKLDILPLKYLIAVNAFLLLIFL
YDFTSQFTKAHIIGKILAVLMSGVIVFIYLVSSKLDSVLNKLNLPEINTDIVDVVVLADDKASSLNDLANYKFAYNSTAS
NANVKTAFDSVKSELNKSSLELAEYKSWDDLVTAFYDNTEVQAIVMNDSMLKVVASQYEDFDTKVKIIKQYEYKKLVTVQ
KSNVNVKKNPFIIYVSGISSDDGDDFQLQNNALSDVNIVAVINPETKQILLVTTPRDSYIKITGPDGRKGYDKLTHAGNY
GVEASMDTLQNLYGIDIDYYVKINFSGCIAVVDALGGITIDSEVEFTCGEDASPIPYHFVKGPNECDGEMAVAFSRERHA
FAAGDFQRGRNQTAAIKGILQKATSPAILTKYSAVLDAVSDMFLTNIPTSTISDLVKLQLSDSTAWNIQTYSIEGSTQPP
AGQGPAYLEITGLRGASVVYPYADSINTAIQLMSKIQNGDIFDVDEYVDSLNNNSN
>Mature_535_residues
SNFFTRSKDDMKYLFKNKEELSKKERKRKRRGWGTLIGLILVLIQLIVSGLLLFNIFKLDILPLKYLIAVNAFLLLIFLY
DFTSQFTKAHIIGKILAVLMSGVIVFIYLVSSKLDSVLNKLNLPEINTDIVDVVVLADDKASSLNDLANYKFAYNSTASN
ANVKTAFDSVKSELNKSSLELAEYKSWDDLVTAFYDNTEVQAIVMNDSMLKVVASQYEDFDTKVKIIKQYEYKKLVTVQK
SNVNVKKNPFIIYVSGISSDDGDDFQLQNNALSDVNIVAVINPETKQILLVTTPRDSYIKITGPDGRKGYDKLTHAGNYG
VEASMDTLQNLYGIDIDYYVKINFSGCIAVVDALGGITIDSEVEFTCGEDASPIPYHFVKGPNECDGEMAVAFSRERHAF
AAGDFQRGRNQTAAIKGILQKATSPAILTKYSAVLDAVSDMFLTNIPTSTISDLVKLQLSDSTAWNIQTYSIEGSTQPPA
GQGPAYLEITGLRGASVVYPYADSINTAIQLMSKIQNGDIFDVDEYVDSLNNNSN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 59389; Mature: 59258

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFFTRSKDDMKYLFKNKEELSKKERKRKRRGWGTLIGLILVLIQLIVSGLLLFNIFKL
CCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DILPLKYLIAVNAFLLLIFLYDFTSQFTKAHIIGKILAVLMSGVIVFIYLVSSKLDSVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLNLPEINTDIVDVVVLADDKASSLNDLANYKFAYNSTASNANVKTAFDSVKSELNKSSL
HCCCCCCCCCEEEEEEEECCCCHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHCHHHH
ELAEYKSWDDLVTAFYDNTEVQAIVMNDSMLKVVASQYEDFDTKVKIIKQYEYKKLVTVQ
HHHHCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEE
KSNVNVKKNPFIIYVSGISSDDGDDFQLQNNALSDVNIVAVINPETKQILLVTTPRDSYI
ECCCCEECCCEEEEEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCEE
KITGPDGRKGYDKLTHAGNYGVEASMDTLQNLYGIDIDYYVKINFSGCIAVVDALGGITI
EEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCEEE
DSEVEFTCGEDASPIPYHFVKGPNECDGEMAVAFSRERHAFAAGDFQRGRNQTAAIKGIL
CCCEEEECCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEECCCHHCCCCHHHHHHHHH
QKATSPAILTKYSAVLDAVSDMFLTNIPTSTISDLVKLQLSDSTAWNIQTYSIEGSTQPP
HHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEEEEEECCCCCCC
AGQGPAYLEITGLRGASVVYPYADSINTAIQLMSKIQNGDIFDVDEYVDSLNNNSN
CCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCC
>Mature Secondary Structure 
SNFFTRSKDDMKYLFKNKEELSKKERKRKRRGWGTLIGLILVLIQLIVSGLLLFNIFKL
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DILPLKYLIAVNAFLLLIFLYDFTSQFTKAHIIGKILAVLMSGVIVFIYLVSSKLDSVLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLNLPEINTDIVDVVVLADDKASSLNDLANYKFAYNSTASNANVKTAFDSVKSELNKSSL
HCCCCCCCCCEEEEEEEECCCCHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHCHHHH
ELAEYKSWDDLVTAFYDNTEVQAIVMNDSMLKVVASQYEDFDTKVKIIKQYEYKKLVTVQ
HHHHCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEE
KSNVNVKKNPFIIYVSGISSDDGDDFQLQNNALSDVNIVAVINPETKQILLVTTPRDSYI
ECCCCEECCCEEEEEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCEE
KITGPDGRKGYDKLTHAGNYGVEASMDTLQNLYGIDIDYYVKINFSGCIAVVDALGGITI
EEECCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHCCEEE
DSEVEFTCGEDASPIPYHFVKGPNECDGEMAVAFSRERHAFAAGDFQRGRNQTAAIKGIL
CCCEEEECCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEECCCHHCCCCHHHHHHHHH
QKATSPAILTKYSAVLDAVSDMFLTNIPTSTISDLVKLQLSDSTAWNIQTYSIEGSTQPP
HHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEEEEEECCCCCCC
AGQGPAYLEITGLRGASVVYPYADSINTAIQLMSKIQNGDIFDVDEYVDSLNNNSN
CCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]