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The map label for this gene is ytdP [H]

Identifier: 238917165

GI number: 238917165

Start: 1257765

End: 1258514

Strand: Direct

Name: ytdP [H]

Synonym: EUBELI_01238

Alternate gene names: 238917165

Gene position: 1257765-1258514 (Clockwise)

Preceding gene: 238917145

Following gene: 238917168

Centisome position: 58.66

GC content: 33.87

Gene sequence:

>750_bases
ATGATGCATGGCAATTGTACTATTTCAATAGATAACAGGCTTTTCACTCTTTCCGAAGGAAACATTATATTTATACCTGC
CAACTCAGTACACAGAACATCATATATTGGTGAGCTTGTTCCTGAAAGAACATATATAGAATTTTCTAAAGACTATATAG
AAACCATCAGCCAGACTCTCGGTAAAAACTGGGCTGAGCACAATCTTTGGGGACATATTTTATATATAGAAAAAGAAAAA
CGCGAAAAAATTGATTTCCTGTTCAGAGAAATCCAGAAGGAATATGATATTGTTGATGGCTATTCAGACTGCTGTATAAG
ACAGCTTTTCCAATATCTCATTATCAATCTCATCCGTCTTGACAGAAATACTAAAGATATAAAAGAATTCATTACCAATT
CAGATAATAAAATTAATCAGAACATGATCATTGCTGCCAAATATATTGCAGAAAATTTTAAGAACGATATTACACTCAAA
GATGTTGCCAGCCATTTAAATCTTAATCCATCGTATTTTTCCAGCAAATTCAAGGCTTTTAACAACATCGGATTCGCCGA
ATACCTACGTAATATCCGCGTCAATCATGCTGAATGGTATCTTATCGAAACAGACTTAAGCCTTTCAGATATTGCCAGCG
AATGTGGCTTCTGTAATTCCAATTATTTCGGTGATACATTTAAACTGGTCAATGGAATATCACCATCTGAATTCAGAAAG
AATAATAAGCCTAAGAAAGCTGAAAACTGA

Upstream 100 bases:

>100_bases
CATTAACAATATATCAAGATTCAGAATTGACCATTCATTTCATAAGCTGCACTATGCCATGCATTCTGCACACAGCCACA
CATACTATGAACTGTTTTAC

Downstream 100 bases:

>100_bases
TGTTTTTACATAAAAAAACTGTTACACATGGCCGAAAGCCAAATGTAACAGTTTTTAAATTATATTCAGATCAGCCATTC
CATTGATATATTATACAGAA

Product: two-component system response regulator YesN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTLGKNWAEHNLWGHILYIEKEK
REKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRLDRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLK
DVASHLNLNPSYFSSKFKAFNNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK
NNKPKKAEN

Sequences:

>Translated_249_residues
MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTLGKNWAEHNLWGHILYIEKEK
REKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRLDRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLK
DVASHLNLNPSYFSSKFKAFNNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK
NNKPKKAEN
>Mature_249_residues
MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTLGKNWAEHNLWGHILYIEKEK
REKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRLDRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLK
DVASHLNLNPSYFSSKFKAFNNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK
NNKPKKAEN

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=99, Percent_Identity=35.3535353535354, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790391, Length=94, Percent_Identity=38.2978723404255, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI171474011, Length=249, Percent_Identity=23.6947791164659, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788725, Length=130, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29104; Mature: 29104

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTL
CCCCCEEEEECCEEEEEECCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GKNWAEHNLWGHILYIEKEKREKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRL
CCCCHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
DRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLKDVASHLNLNPSYFSSKFKAF
CCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHH
NNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK
HCCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHC
NNKPKKAEN
CCCCCCCCC
>Mature Secondary Structure
MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTL
CCCCCEEEEECCEEEEEECCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GKNWAEHNLWGHILYIEKEKREKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRL
CCCCHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
DRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLKDVASHLNLNPSYFSSKFKAF
CCCHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHH
NNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK
HCCCHHHHHHHCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHC
NNKPKKAEN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]