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The map label for this gene is kduI

Identifier: 238917041

GI number: 238917041

Start: 1120630

End: 1121472

Strand: Reverse

Name: kduI

Synonym: EUBELI_01111

Alternate gene names: 238917041

Gene position: 1121472-1120630 (Counterclockwise)

Preceding gene: 238917042

Following gene: 238917040

Centisome position: 52.3

GC content: 39.5

Gene sequence:

>843_bases
ATGGAAGTAAGACAGGGTGCTAACGCAAGAGATGTAAAGGGTTATGATACAGAAAGACTGAGAAATGATTTTCTTATCCA
GAATCTTTTCCCAGCTGATGATTTCAAGCTTGTTTACAGCCAGATTGATCGTATTATCGTAGGCGGATGTATGCCGGTTA
ATAAGGAACTTACACTTGAGGCAGGTTCTGAACTTAAGGCTGCATATTTCCTTGAGAGACGTGAGATGGGTATCTTTAAT
GTAGGTGGCAACGGTTCAGTTATCGTTGATGGTACTGAATATAAGTTTAAATATAGAGATGGTCTTTATATTGGTATGGG
TTCTAAGGAGATTAAGTTCAAGAGCGAGGATTCTTCTAAGCCAGCTAAGTTCTACTTTAACTCAACACCAGCACATAAGA
CATATCCTACAGTATTTATTGATCCAGAAAAGGATATCAAGGATGAGTTCAAGCTTCAGCTTGGTTCTGTAGAAGGATGC
AATAAGCGTCTTAACAGAAAGTATATTTTACCAGGTCAGGTTGAGACATGCCAGTTAGAGATGGGTATCACAACTCTTGA
GCCAGGAAGTGTATGGAATACAATGCCATGTCATACACATGACAGACGAATGGAAGTTTATTTCTACTTCGAGATTCCAG
AAGAAGATATCGTTGTTCACTACATGGGTGAGCCAACAGAAACTCGTCATATCATCATGAGAAGTGAAGAAGCAGTTATT
TCACCAAGCTGGTCAATTCATTCAGCATCAGCTACACATGCATATGCATTTATCTGGGGAATGGCTGGAGAAAACCAGGA
TTTCGATGATATGGACTGGGTAGACATGAAGGATTTAAAGTAA

Upstream 100 bases:

>100_bases
GGAATAGTTGGTTAATAGTTGTAAATAATTGGTTTTTGTGGTATTATAAACACCAAACGGGGCTTTGCCCTAGGTTTGTG
AATTGAAAAGGAGAGTTACG

Downstream 100 bases:

>100_bases
TCCGTCAGTACATATTTTACTAAGGAATGTAACCTGTAGAGGGTTTCATTTATAAATTATTATTAGGAAAAGGAGAATTA
AAATGTCAGTTAATTTTTCA

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MEVRQGANARDVKGYDTERLRNDFLIQNLFPADDFKLVYSQIDRIIVGGCMPVNKELTLEAGSELKAAYFLERREMGIFN
VGGNGSVIVDGTEYKFKYRDGLYIGMGSKEIKFKSEDSSKPAKFYFNSTPAHKTYPTVFIDPEKDIKDEFKLQLGSVEGC
NKRLNRKYILPGQVETCQLEMGITTLEPGSVWNTMPCHTHDRRMEVYFYFEIPEEDIVVHYMGEPTETRHIIMRSEEAVI
SPSWSIHSASATHAYAFIWGMAGENQDFDDMDWVDMKDLK

Sequences:

>Translated_280_residues
MEVRQGANARDVKGYDTERLRNDFLIQNLFPADDFKLVYSQIDRIIVGGCMPVNKELTLEAGSELKAAYFLERREMGIFN
VGGNGSVIVDGTEYKFKYRDGLYIGMGSKEIKFKSEDSSKPAKFYFNSTPAHKTYPTVFIDPEKDIKDEFKLQLGSVEGC
NKRLNRKYILPGQVETCQLEMGITTLEPGSVWNTMPCHTHDRRMEVYFYFEIPEEDIVVHYMGEPTETRHIIMRSEEAVI
SPSWSIHSASATHAYAFIWGMAGENQDFDDMDWVDMKDLK
>Mature_280_residues
MEVRQGANARDVKGYDTERLRNDFLIQNLFPADDFKLVYSQIDRIIVGGCMPVNKELTLEAGSELKAAYFLERREMGIFN
VGGNGSVIVDGTEYKFKYRDGLYIGMGSKEIKFKSEDSSKPAKFYFNSTPAHKTYPTVFIDPEKDIKDEFKLQLGSVEGC
NKRLNRKYILPGQVETCQLEMGITTLEPGSVWNTMPCHTHDRRMEVYFYFEIPEEDIVVHYMGEPTETRHIIMRSEEAVI
SPSWSIHSASATHAYAFIWGMAGENQDFDDMDWVDMKDLK

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=283, Percent_Identity=54.7703180212014, Blast_Score=334, Evalue=3e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_EUBE2 (C4Z0J8)

Other databases:

- EMBL:   CP001104
- RefSeq:   YP_002930558.1
- GeneID:   7957418
- GenomeReviews:   CP001104_GR
- KEGG:   eel:EUBELI_01111
- OMA:   LTMGLTK
- ProtClustDB:   PRK00924
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 32156; Mature: 32156

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRQGANARDVKGYDTERLRNDFLIQNLFPADDFKLVYSQIDRIIVGGCMPVNKELTLE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEE
AGSELKAAYFLERREMGIFNVGGNGSVIVDGTEYKFKYRDGLYIGMGSKEIKFKSEDSSK
CCCCCEEHEEEHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEECCCCEEEEECCCCCC
PAKFYFNSTPAHKTYPTVFIDPEKDIKDEFKLQLGSVEGCNKRLNRKYILPGQVETCQLE
CEEEEECCCCCCCCCCEEEECCCCCCCCHHEEEECCCCCHHHHCCCEEECCCCCEEEEEE
MGITTLEPGSVWNTMPCHTHDRRMEVYFYFEIPEEDIVVHYMGEPTETRHIIMRSEEAVI
ECCEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCEEE
SPSWSIHSASATHAYAFIWGMAGENQDFDDMDWVDMKDLK
CCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEVRQGANARDVKGYDTERLRNDFLIQNLFPADDFKLVYSQIDRIIVGGCMPVNKELTLE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCCCCCEEEEE
AGSELKAAYFLERREMGIFNVGGNGSVIVDGTEYKFKYRDGLYIGMGSKEIKFKSEDSSK
CCCCCEEHEEEHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEECCCCEEEEECCCCCC
PAKFYFNSTPAHKTYPTVFIDPEKDIKDEFKLQLGSVEGCNKRLNRKYILPGQVETCQLE
CEEEEECCCCCCCCCCEEEECCCCCCCCHHEEEECCCCCHHHHCCCEEECCCCCEEEEEE
MGITTLEPGSVWNTMPCHTHDRRMEVYFYFEIPEEDIVVHYMGEPTETRHIIMRSEEAVI
ECCEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCEEEEEECCCEEE
SPSWSIHSASATHAYAFIWGMAGENQDFDDMDWVDMKDLK
CCCCCEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA