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The map label for this gene is ylmD [H]

Identifier: 238916973

GI number: 238916973

Start: 1055531

End: 1056415

Strand: Reverse

Name: ylmD [H]

Synonym: EUBELI_01042

Alternate gene names: 238916973

Gene position: 1056415-1055531 (Counterclockwise)

Preceding gene: 238916974

Following gene: 238916971

Centisome position: 49.27

GC content: 36.16

Gene sequence:

>885_bases
ATGAACATTAAATATATTGATACAGGAACACTTTATGAAGGATTAAAAGGAGCTGTGGTTAATAATTCCACAAGAATATC
ACAGAAGAATGGAATTCCTTATATTGAGTTTACACCATTTGATGAATTTGACTGGGTCACTCTTCATTTTTCAACAAGAG
ATGGTGGAGTGAGCAAAGGGATATATTCAAGCATGAACTTTTCTTTTGACAGGGGCGATGATTATGAAAATGTATATAAG
AATTATGAGTTATTTCTAGATACAATGAATATTAAGCCTGAAAACTGTGTTTGTACAAAACAGACACATACTACCAATGT
GATTGCTGTTGATTATAATATGGCAGGAATGGGACTTACAAGAGCAAGAGATTTTGATAATGTTGACGGACTTGTAACTA
ATGAAGCCGGTCTGTGTCTTATTACATATTTTGCAGACTGTGTACCTGTATATTTTATTGATCCTGTAAACAGATGCATA
GGTGCATCACATTCAGGATGGCGTGGAACGGTTGCAGATATAACACATGAAACGGTACAGCTTATGAACAGAACTTATGG
GGCAAAGCCAGAGGATATTCATGCATTCATAGGACCATCAATATGTCAGGACTGTTATGAGGTTGATGAATCAGTTGCAG
AAAAGTTCAGAAGTGCTTACAGCCAGAATGAAATCTGTATGATACTTTATCATACGACAGGAGATAAATACCAGCTTAAT
CTTCAGGCAGCTAATTATTTTAATATGATTCATGCCGGAATAAAACCTGATAACATAGGTATATCTGACATATGCACAAG
CTGTAACAGTGACTGGCTCTTTTCACACAGGGCTTCACATGGAAAACGTGGCGTTTTGTGTGGATTCATGAGTATATGCA
GATAA

Upstream 100 bases:

>100_bases
GATATAAAAGCTGTGATATACCATGCCGTTTTGATGTCATAGGAATAGATGGCGAAACAGTAACACATATTAAAAATGCA
TTTTAATAAGGATTATAATC

Downstream 100 bases:

>100_bases
TATATTAAAAAGCCAGAACAGATGTTTTGATGATAATCTGTTCTGGCTTTTTTTATTTTTTGTTATGTTCCTGTTTGTAT
CTGGCTCTTAATTCAGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNIKYIDTGTLYEGLKGAVVNNSTRISQKNGIPYIEFTPFDEFDWVTLHFSTRDGGVSKGIYSSMNFSFDRGDDYENVYK
NYELFLDTMNIKPENCVCTKQTHTTNVIAVDYNMAGMGLTRARDFDNVDGLVTNEAGLCLITYFADCVPVYFIDPVNRCI
GASHSGWRGTVADITHETVQLMNRTYGAKPEDIHAFIGPSICQDCYEVDESVAEKFRSAYSQNEICMILYHTTGDKYQLN
LQAANYFNMIHAGIKPDNIGISDICTSCNSDWLFSHRASHGKRGVLCGFMSICR

Sequences:

>Translated_294_residues
MNIKYIDTGTLYEGLKGAVVNNSTRISQKNGIPYIEFTPFDEFDWVTLHFSTRDGGVSKGIYSSMNFSFDRGDDYENVYK
NYELFLDTMNIKPENCVCTKQTHTTNVIAVDYNMAGMGLTRARDFDNVDGLVTNEAGLCLITYFADCVPVYFIDPVNRCI
GASHSGWRGTVADITHETVQLMNRTYGAKPEDIHAFIGPSICQDCYEVDESVAEKFRSAYSQNEICMILYHTTGDKYQLN
LQAANYFNMIHAGIKPDNIGISDICTSCNSDWLFSHRASHGKRGVLCGFMSICR
>Mature_294_residues
MNIKYIDTGTLYEGLKGAVVNNSTRISQKNGIPYIEFTPFDEFDWVTLHFSTRDGGVSKGIYSSMNFSFDRGDDYENVYK
NYELFLDTMNIKPENCVCTKQTHTTNVIAVDYNMAGMGLTRARDFDNVDGLVTNEAGLCLITYFADCVPVYFIDPVNRCI
GASHSGWRGTVADITHETVQLMNRTYGAKPEDIHAFIGPSICQDCYEVDESVAEKFRSAYSQNEICMILYHTTGDKYQLN
LQAANYFNMIHAGIKPDNIGISDICTSCNSDWLFSHRASHGKRGVLCGFMSICR

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=250, Percent_Identity=30, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI190194372, Length=250, Percent_Identity=30, Blast_Score=103, Evalue=3e-22,
Organism=Escherichia coli, GI1788945, Length=227, Percent_Identity=29.0748898678414, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 33052; Mature: 33052

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKYIDTGTLYEGLKGAVVNNSTRISQKNGIPYIEFTPFDEFDWVTLHFSTRDGGVSKG
CCEEEECCCHHHHCCCCEEECCCCEEHHCCCCCEEEECCCCCCCEEEEEEECCCCCCCCC
IYSSMNFSFDRGDDYENVYKNYELFLDTMNIKPENCVCTKQTHTTNVIAVDYNMAGMGLT
HHHHCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCC
RARDFDNVDGLVTNEAGLCLITYFADCVPVYFIDPVNRCIGASHSGWRGTVADITHETVQ
CCCCCCCCCCEEECCCCEEEEEEHHHHCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHH
LMNRTYGAKPEDIHAFIGPSICQDCYEVDESVAEKFRSAYSQNEICMILYHTTGDKYQLN
HHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE
LQAANYFNMIHAGIKPDNIGISDICTSCNSDWLFSHRASHGKRGVLCGFMSICR
EEHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEHHCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MNIKYIDTGTLYEGLKGAVVNNSTRISQKNGIPYIEFTPFDEFDWVTLHFSTRDGGVSKG
CCEEEECCCHHHHCCCCEEECCCCEEHHCCCCCEEEECCCCCCCEEEEEEECCCCCCCCC
IYSSMNFSFDRGDDYENVYKNYELFLDTMNIKPENCVCTKQTHTTNVIAVDYNMAGMGLT
HHHHCCCCCCCCCCHHHHHCCEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCC
RARDFDNVDGLVTNEAGLCLITYFADCVPVYFIDPVNRCIGASHSGWRGTVADITHETVQ
CCCCCCCCCCEEECCCCEEEEEEHHHHCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHH
LMNRTYGAKPEDIHAFIGPSICQDCYEVDESVAEKFRSAYSQNEICMILYHTTGDKYQLN
HHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEE
LQAANYFNMIHAGIKPDNIGISDICTSCNSDWLFSHRASHGKRGVLCGFMSICR
EEHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEHHCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]