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The map label for this gene is ispH [H]

Identifier: 238916861

GI number: 238916861

Start: 945155

End: 946222

Strand: Direct

Name: ispH [H]

Synonym: EUBELI_00930

Alternate gene names: 238916861

Gene position: 945155-946222 (Clockwise)

Preceding gene: 238916860

Following gene: 238916863

Centisome position: 44.08

GC content: 39.14

Gene sequence:

>1068_bases
ATGTTAGATAACGAAGAATGGAAGGAAATCCGTACAGGAGAGGTGGTAGACGGAAGAGTTATTGCAGTTAAGCCAGATAG
AATTGTACTTAATATAGGTGGCAAATCTGATGGAATCATTACTCGTTCAGAGTATACATCAGCTCCTGATGTGGATCTTA
CTACTGTAGTCTCAGTTGGAGATGAGATGAAGGCTAAGGTTCTTAAATCAAACGATGGTGAGGGACAGGTTGCTCTTACA
TATAGAAAGCTTGTTGCAGATAATGGCAATAAGAAACTTGAAGATGCATTTAATAATCAGGAGCCAATTACAGGTGTAGC
TAAGAACATCAAGGGTGGTCTTGAGGTTATCGTTGATGAAGCAAGAGTATTTATTCCTGCAAGCCTTATTTCAGATACAT
TTGTTAAGGATTTATCTGTATATAACGGTAAGGAAGTTACATTTGTCATCACTGAATATGATCCTAAGAACAGAAAGATT
ATCGGTGATTGCAAGCAGCTTATTGTTGCAGCTAAGAAGGCAGCAGCAGAGGCAGTTCTTTCTAAGATTAAGGAAGGCGA
TACAATCGAAGGAACAGTTAAGAATGTTACAGATTTCGGTGCATTCATTGACTTAGGCGGTGTAGATGGTCTTCTTCACA
TCTCAGAGATGTCTTGGGGAAGAACAGAGAATCCTAAGAAGGTTTACAAGATTGGTGATTCAGTTAAGTGCTTTATCAAA
GAGATTAACGGAGATAAGATTGCACTTTCAGTTAAGTATCCAGACCTTAATCCATGGAATAACGCAGCAGAGAAGTATGC
TGTAGGTAATGTTGTTAAGGGAACAGTTGCAAGAATGACAGATTTCGGTGCATTTGTCCAGTTAGAAGATGGTATCGATG
CATTACTTCATGTTTCACAGATTTCAAGAGATCGTATTGAAAAGCCATCTGACGCACTTTCAATCGGTCAGGAAATTGAA
GCTAAGGTTGTTGACCTTAACGAAGCTGATAAGAAGATCAGCTTAAGCATTAAGGCATTACTTAACGACAACGAAGCTCA
GGAAGAAGCTCCAGCAACAGAAGAGTAA

Upstream 100 bases:

>100_bases
CTCGAATCATCAGACTGCATAGGTATTACAGCCGGGGCATCAACCCCAAACAATATCATTGAGGAGGTTTATACTAATGT
CAGAAGAAAGCTTTGCACAG

Downstream 100 bases:

>100_bases
TAAAAAGATATTATAAGGGCTGTTCTCACAGCCCTTTTTTTAAACATATTTTTTAAATGAAAGATAAACACGGCCTTTTT
TGGTTTCTCTACCGCACCCC

Product: small subunit ribosomal protein S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MLDNEEWKEIRTGEVVDGRVIAVKPDRIVLNIGGKSDGIITRSEYTSAPDVDLTTVVSVGDEMKAKVLKSNDGEGQVALT
YRKLVADNGNKKLEDAFNNQEPITGVAKNIKGGLEVIVDEARVFIPASLISDTFVKDLSVYNGKEVTFVITEYDPKNRKI
IGDCKQLIVAAKKAAAEAVLSKIKEGDTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIK
EINGDKIALSVKYPDLNPWNNAAEKYAVGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQISRDRIEKPSDALSIGQEIE
AKVVDLNEADKKISLSIKALLNDNEAQEEAPATEE

Sequences:

>Translated_355_residues
MLDNEEWKEIRTGEVVDGRVIAVKPDRIVLNIGGKSDGIITRSEYTSAPDVDLTTVVSVGDEMKAKVLKSNDGEGQVALT
YRKLVADNGNKKLEDAFNNQEPITGVAKNIKGGLEVIVDEARVFIPASLISDTFVKDLSVYNGKEVTFVITEYDPKNRKI
IGDCKQLIVAAKKAAAEAVLSKIKEGDTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIK
EINGDKIALSVKYPDLNPWNNAAEKYAVGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQISRDRIEKPSDALSIGQEIE
AKVVDLNEADKKISLSIKALLNDNEAQEEAPATEE
>Mature_355_residues
MLDNEEWKEIRTGEVVDGRVIAVKPDRIVLNIGGKSDGIITRSEYTSAPDVDLTTVVSVGDEMKAKVLKSNDGEGQVALT
YRKLVADNGNKKLEDAFNNQEPITGVAKNIKGGLEVIVDEARVFIPASLISDTFVKDLSVYNGKEVTFVITEYDPKNRKI
IGDCKQLIVAAKKAAAEAVLSKIKEGDTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIK
EINGDKIALSVKYPDLNPWNNAAEKYAVGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQISRDRIEKPSDALSIGQEIE
AKVVDLNEADKKISLSIKALLNDNEAQEEAPATEE

Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]

COG id: COG0539

COG function: function code J; Ribosomal protein S1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 S1 motif domains [H]

Homologues:

Organism=Escherichia coli, GI1787140, Length=334, Percent_Identity=32.9341317365269, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI145693187, Length=71, Percent_Identity=46.4788732394366, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6323885, Length=266, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: 16,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003451
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR000110
- InterPro:   IPR022967 [H]

Pfam domain/function: PF02401 LYTB; PF00575 S1 [H]

EC number: =1.17.1.2 [H]

Molecular weight: Translated: 38625; Mature: 38625

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNEEWKEIRTGEVVDGRVIAVKPDRIVLNIGGKSDGIITRSEYTSAPDVDLTTVVSVG
CCCCHHHHHCCCCCEECCEEEEEECCEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECC
DEMKAKVLKSNDGEGQVALTYRKLVADNGNKKLEDAFNNQEPITGVAKNIKGGLEVIVDE
CHHHHHHHCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCCHHHHHHCCCCCEEEEEC
ARVFIPASLISDTFVKDLSVYNGKEVTFVITEYDPKNRKIIGDCKQLIVAAKKAAAEAVL
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
SKIKEGDTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIK
HHHHCCCCCCCHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCHHEEECCCCCEEEEE
EINGDKIALSVKYPDLNPWNNAAEKYAVGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQ
ECCCCEEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
ISRDRIEKPSDALSIGQEIEAKVVDLNEADKKISLSIKALLNDNEAQEEAPATEE
HHHHHCCCCHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCHHHCCCCCCC
>Mature Secondary Structure
MLDNEEWKEIRTGEVVDGRVIAVKPDRIVLNIGGKSDGIITRSEYTSAPDVDLTTVVSVG
CCCCHHHHHCCCCCEECCEEEEEECCEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECC
DEMKAKVLKSNDGEGQVALTYRKLVADNGNKKLEDAFNNQEPITGVAKNIKGGLEVIVDE
CHHHHHHHCCCCCCCEEEEEEEEHHHCCCCCHHHHHCCCCCCCHHHHHHCCCCCEEEEEC
ARVFIPASLISDTFVKDLSVYNGKEVTFVITEYDPKNRKIIGDCKQLIVAAKKAAAEAVL
CCEEEEHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
SKIKEGDTIEGTVKNVTDFGAFIDLGGVDGLLHISEMSWGRTENPKKVYKIGDSVKCFIK
HHHHCCCCCCCHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCHHEEECCCCCEEEEE
EINGDKIALSVKYPDLNPWNNAAEKYAVGNVVKGTVARMTDFGAFVQLEDGIDALLHVSQ
ECCCCEEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHH
ISRDRIEKPSDALSIGQEIEAKVVDLNEADKKISLSIKALLNDNEAQEEAPATEE
HHHHHCCCCHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEECCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]