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The map label for this gene is gcdB [H]

Identifier: 238916854

GI number: 238916854

Start: 938022

End: 939173

Strand: Direct

Name: gcdB [H]

Synonym: EUBELI_00923

Alternate gene names: 238916854

Gene position: 938022-939173 (Clockwise)

Preceding gene: 238916853

Following gene: 238916855

Centisome position: 43.75

GC content: 39.58

Gene sequence:

>1152_bases
ATGAGTTATATTATAACAACTTTAGGAAACCTCGTTCACCAGAGTGCATTCTTCGGACTTACATGGGGTAATTACCTTAT
GGTTCTGGTTGCGTTTGTTTTCCTTTATCTTGCAATTAAAAAAGGATATGAACCTCTGCTCTTAGTACCTATTTCTTTTG
GTATGCTTCTTGTAAACCTTTATCCTGACATTATGTTAGCAATAGAGGATTCAAGTAACGGTGTAGGTGGTTTGTTACAT
TATTTCTATTTACTTGATGAATGGAGTATTTTACCATCACTTATTTTCTTAGGTGTTGGTGCCATGACTGATTTTGGTCC
ATTGATTGCTAACCCGGCAAGTTTCCTGCTTGGTGCAGCAGCACAGTTTGGTATCTTTGCAGCATATCTTATGGCTATTC
TTATGGGATTCCCAGATAAGGCAGCAGCAGCTATATCAATTATTGGTGGTGCAGATGGTCCTACTTCAATATTCCTTGCA
GGTAAGCTTGGTCAGACTAAATATATGGGACCTATTGCAGTAGCAGCATATTCATATATGTCACTGGTTCCTATTATCCA
GCCACCAATTATGAAGCTTTTAACAACTAAGAAGGAAAGAGAAGTTAAGATGGAACAGTTAAGACCTGTTTCTAAGCTTG
AGAAGATTCTTTTCCCTATAGTAGTTACTGTAGTAGTAGTACTTATTCTTCCTACAACAGCACCACTTGTTGGTATGCTC
ATGTTAGGTAACCTTTTCAAGGAAAGTGGAGTTGTTAAGCAGCTTGCAGAGACAGCTTCTAATGCACTTATGTACATAGT
TGTTATTATCCTTGGAACATCAGTTGGTGCTACAACAAGTGCAGAAGCATTTCTTAACCTTGATACATTAAAGATTGTTG
CATTAGGACTTATTGCATTCGCATTTGGTACTGCAGCAGGTGTGTTATTTGGTAAGATTATGTGTCTTGTTACACATGGT
AAGGTTAATCCGCTTATTGGTTCAGCAGGTGTATCTGCGGTTCCTATGGCAGCCAGAGTTTCGCAGAAGGTTGGTTCTGA
GGCAGATCCTTCTAACTTCCTTCTGATGCATGCTATGGGACCTAACGTTGCCGGTGTTATTGGTACAGCGGTTGCAGCCG
GTACATTTATGGCCATGTTTGGCGTTATGTAA

Upstream 100 bases:

>100_bases
CTGTTGAGTGTGCAGCTGGTGATTCTGTAGAGTCAGGTAAGGTATTAGTTTCATTAAATTAATTATGATACTGATATAAA
GTGACTTACGGAGGTATAAG

Downstream 100 bases:

>100_bases
AAGGAGGATATTATGGCAGAACAGGTTAAAAAACCTTTAAAGATTACTGAGACAGTATTGCGTGATGCACATCAGTCTCT
TATAGCTACAAGAATGACAA

Product: glutaconyl-CoA decarboxylase

Products: NA

Alternate protein names: Carboxylyase [H]

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MSYIITTLGNLVHQSAFFGLTWGNYLMVLVAFVFLYLAIKKGYEPLLLVPISFGMLLVNLYPDIMLAIEDSSNGVGGLLH
YFYLLDEWSILPSLIFLGVGAMTDFGPLIANPASFLLGAAAQFGIFAAYLMAILMGFPDKAAAAISIIGGADGPTSIFLA
GKLGQTKYMGPIAVAAYSYMSLVPIIQPPIMKLLTTKKEREVKMEQLRPVSKLEKILFPIVVTVVVVLILPTTAPLVGML
MLGNLFKESGVVKQLAETASNALMYIVVIILGTSVGATTSAEAFLNLDTLKIVALGLIAFAFGTAAGVLFGKIMCLVTHG
KVNPLIGSAGVSAVPMAARVSQKVGSEADPSNFLLMHAMGPNVAGVIGTAVAAGTFMAMFGVM

Sequences:

>Translated_383_residues
MSYIITTLGNLVHQSAFFGLTWGNYLMVLVAFVFLYLAIKKGYEPLLLVPISFGMLLVNLYPDIMLAIEDSSNGVGGLLH
YFYLLDEWSILPSLIFLGVGAMTDFGPLIANPASFLLGAAAQFGIFAAYLMAILMGFPDKAAAAISIIGGADGPTSIFLA
GKLGQTKYMGPIAVAAYSYMSLVPIIQPPIMKLLTTKKEREVKMEQLRPVSKLEKILFPIVVTVVVVLILPTTAPLVGML
MLGNLFKESGVVKQLAETASNALMYIVVIILGTSVGATTSAEAFLNLDTLKIVALGLIAFAFGTAAGVLFGKIMCLVTHG
KVNPLIGSAGVSAVPMAARVSQKVGSEADPSNFLLMHAMGPNVAGVIGTAVAAGTFMAMFGVM
>Mature_382_residues
SYIITTLGNLVHQSAFFGLTWGNYLMVLVAFVFLYLAIKKGYEPLLLVPISFGMLLVNLYPDIMLAIEDSSNGVGGLLHY
FYLLDEWSILPSLIFLGVGAMTDFGPLIANPASFLLGAAAQFGIFAAYLMAILMGFPDKAAAAISIIGGADGPTSIFLAG
KLGQTKYMGPIAVAAYSYMSLVPIIQPPIMKLLTTKKEREVKMEQLRPVSKLEKILFPIVVTVVVVLILPTTAPLVGMLM
LGNLFKESGVVKQLAETASNALMYIVVIILGTSVGATTSAEAFLNLDTLKIVALGLIAFAFGTAAGVLFGKIMCLVTHGK
VNPLIGSAGVSAVPMAARVSQKVGSEADPSNFLLMHAMGPNVAGVIGTAVAAGTFMAMFGVM

Specific function: Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]

COG id: COG1883

COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcdB/mmdB/oadB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005661 [H]

Pfam domain/function: PF03977 OAD_beta [H]

EC number: =4.1.1.70 [H]

Molecular weight: Translated: 40342; Mature: 40211

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYIITTLGNLVHQSAFFGLTWGNYLMVLVAFVFLYLAIKKGYEPLLLVPISFGMLLVNL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
YPDIMLAIEDSSNGVGGLLHYFYLLDEWSILPSLIFLGVGAMTDFGPLIANPASFLLGAA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH
AQFGIFAAYLMAILMGFPDKAAAAISIIGGADGPTSIFLAGKLGQTKYMGPIAVAAYSYM
HHHHHHHHHHHHHHHCCCCHHHHEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
SLVPIIQPPIMKLLTTKKEREVKMEQLRPVSKLEKILFPIVVTVVVVLILPTTAPLVGML
HHHHHCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MLGNLFKESGVVKQLAETASNALMYIVVIILGTSVGATTSAEAFLNLDTLKIVALGLIAF
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AFGTAAGVLFGKIMCLVTHGKVNPLIGSAGVSAVPMAARVSQKVGSEADPSNFLLMHAMG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
PNVAGVIGTAVAAGTFMAMFGVM
CCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SYIITTLGNLVHQSAFFGLTWGNYLMVLVAFVFLYLAIKKGYEPLLLVPISFGMLLVNL
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHH
YPDIMLAIEDSSNGVGGLLHYFYLLDEWSILPSLIFLGVGAMTDFGPLIANPASFLLGAA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHH
AQFGIFAAYLMAILMGFPDKAAAAISIIGGADGPTSIFLAGKLGQTKYMGPIAVAAYSYM
HHHHHHHHHHHHHHHCCCCHHHHEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHH
SLVPIIQPPIMKLLTTKKEREVKMEQLRPVSKLEKILFPIVVTVVVVLILPTTAPLVGML
HHHHHCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MLGNLFKESGVVKQLAETASNALMYIVVIILGTSVGATTSAEAFLNLDTLKIVALGLIAF
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AFGTAAGVLFGKIMCLVTHGKVNPLIGSAGVSAVPMAARVSQKVGSEADPSNFLLMHAMG
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECC
PNVAGVIGTAVAAGTFMAMFGVM
CCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10027965 [H]